LOC110496903 (LOC106570720)


Basic Information

Item Value
gene id LOC110496903
gene name LOC106570720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73201799 ~ 73281251 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953658.1
GCCTTGTGGATTCAGAGACACCAGCAAACCGAGAACCGTTGACAAGCATCGTTATCCTCACGCACCAGCAACAAAACCCCAAATATAATCCAAAATATGACATTCTTAACGATACAGCAGAAACAACCCGTGATTTGACAACTTCTGACAAACGATTTACAGTCCGTTGGACGCTCGTAGCTGTAAACGTCCTTTCCATCGTCAGCCCATTGGCTGGCCTCCTCCTGCTCAATAGCCATGATGCTTAGCAGCTCTGTCGAGGTGCCCAGTCCCGGCCACGGCGGCATGTCCGGTCTCTCCGTGACGAGGGCGGCAGCGGTGGGGAACGTCGTCCGGTCCTCCAGTATCTCGGGAGCCGTGTACagcctggagaagagtcccgGCAGCGGCGGTGGGCAGGGAGAGGCGGGAACGCTGACCGGGAACAAGAAGAGACGATCCAGCCTTGGAGCCAAGATGGTGGCCATTGTGGGGCTGTCGCAGTGGAGCAAGAGTACCCTGCAGCTCAACCAGCAAGAAGAACGAGTGAAGAAGCTGCGTGGTACGATCCGGCGGAGCACGGAGACGGGCATCGCTGTGGAGATGAGGAACCGGGTCACGCGACAGGGCAGTAAGGAGTCCACCGACGGCAGCACCAACTCCAACAGCTCTGACGGAACgtTTATCTTCCCTCCCACTCGCATGGGTCCAGAGAGCCAGTTTAGTGACTTTCTGGATGGACTAGGCCCCGCCCAGATCGTAGGCCGACAGACACTAGCCACACCCTCCATGGGTGACATCCATGTGGGTATGGTGGACAGAGGAGGCCAGCTAGAGGTGGAGATCAACCAGGCCAGAGGACTGACCCCTAAACCAGGGTCAAAGAACATCCCAGCGACCTACGTGAAGGTGTATGTGTTGGAGAATGGGGCGTGTCTGGCTAAGAAGAAGACCAGAGTGGTGAAGAAGACTCTAGACCCGTCCTACCAACAGGCCCTGCTGTTTGAAGAGAGTCCTCAGGCCAAAGTCCTCCAGgTGATTGTGTGGGGTGACTATGGGCGGATGGACCACAAGTGTTTCATGGGCATGGCTCAGATCATGCTGGATGAGTTGGACCTTGGTGCCACGGTGAGCGGATGGTACAAGCTGTTCCCCACCTCGTCTCTGGCTGACATCGGACCCCTCACACGACGACTGTCCCAGTCCTCACTGGAGAGCTGTGCCACCAGCCCCTCCTGTAGCTAGACAGAGAGAACtatatagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagatcctcaGATCCATCCCCATAACTACGTCAGATAACATGATTTACCAGAGCATAGCATTATAGTAGCGTTACCTACTGCCCAATATCCCTGTCCCCTGCCCCCTGTCCCGTCACAGAATCCCTGTCCCGTCTCAGAATCCCTGTCCCCTGCCCCCTGTCCCGTCTCAG

Function

NR:

description
LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 3-like

GO: NA

KEGG:

id description
K15298 RIMS3, RIM3; regulating synaptic membrane exocytosis protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953658.1 True 1471 mRNA 0.56 7 73201799 73281251

Neighbor

gene id symbol gene type direction distance location
sync sync coding upstream 26879 73130799 ~ 73174920 (+)
yars1 yars coding upstream 184956 73005896 ~ 73016843 (+)
LOC118941219 LOC103143335 coding upstream 292566 72892854 ~ 72909233 (+)
LOC118941017 NA coding upstream 1255623 71944242 ~ 71946176 (+)
LOC118940973 NA coding upstream 1992156 71208388 ~ 71209643 (+)
LOC110496759 nupl2 coding downstream 115194 73396445 ~ 73418514 (+)
LOC110496757 LOC102790862 coding downstream 252098 73533349 ~ 73721653 (+)
LOC118941018 NA coding downstream 502183 73783434 ~ 73784213 (+)
LOC110496904 fuca1 coding downstream 508267 73789518 ~ 73801888 (+)
LOC110496761 LOC106589111 coding downstream 866148 74147399 ~ 74159321 (+)
G1580527 NA non-coding upstream 39947 73161633 ~ 73161852 (+)
G1580477 NA non-coding upstream 197718 72957664 ~ 73004081 (+)
G1580479 NA non-coding upstream 227957 72963752 ~ 72973842 (+)
G1580465 NA non-coding upstream 286343 72915210 ~ 72915456 (+)
G1580462 NA non-coding upstream 287469 72914119 ~ 72914330 (+)
G1580524 NA non-coding downstream 9865 73291116 ~ 73294312 (+)
G1580567 NA non-coding downstream 14487 73295738 ~ 73296255 (+)
G1580568 NA non-coding downstream 15675 73296926 ~ 73297837 (+)
G1580571 NA non-coding downstream 23232 73304483 ~ 73305990 (+)
G1580577 NA non-coding downstream 47940 73329191 ~ 73331396 (+)
G1580222 NA other upstream 605128 72596064 ~ 72596671 (+)
G1579986 NA other upstream 938579 72262416 ~ 72263220 (+)
G1579615 NA other upstream 974140 72227331 ~ 72227659 (+)
G1579579 NA other upstream 1063207 72138157 ~ 72138592 (+)
G1580586 NA other downstream 62046 73343297 ~ 73343837 (+)
G1580898 NA other downstream 315559 73596810 ~ 73598547 (+)

Expression


Co-expression Network