LOC110517586 (LOC106589098)


Basic Information

Item Value
gene id LOC110517586
gene name LOC106589098
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 73304371 ~ 73363731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953659.1
gtgtgtgtgtgtgtgtgagagagagagaaagaggtgtgaACTGTCAGACGAGAGGACTCGATACCGATGCGCTTGAAAGGAGTGAAGCAAAACCGCTTGTTGCGCTATAATTTTACACAAGAAGACGGCAGGAAAtatagttttttgttgttgttgttgtgatattTACTACCTAATATAGATCTTTCGACGAAGCATAGGAGTGCAATAACAGGCTATAACCTCTGTCTTGCCAGGCCATTACTCATGCATTGTTGTAAGCTAACTGGGTAGCTTTGACTTAAGGGATTGTTCCATAACCTGAAAAACAAATCGCTTCCCTTTtttgaagaggaagaagaggaggcggGGACCGCATAGCTTCTTCTGTATTTCATTTGTCTGGGGTCTGGGTTTTTTTATTCTGCAAACGGAGCTTATCTGAATCAGGCTACTTCGTCTATCTTCATATTAGGACGACAGCGGCGGGTGTCGGAGAGGtgtgtgaggaagaggaagagacaggaatgaTGATGATTGGTAAATCGGTAAAAGACATTGACAGATATCAAACTGTCCTCACTTCGCTACTGTCACTCGAGGAGAACAAATTCTGCGCGGATTGTAAATCCAAAGgTCCCAGATGGGCGTCATGGAACCTGGGTATATTCATCTGTATCCGCTGTGCTGGGATCCACAGGAACCTGGGCGTCCACATCTCCAGGGTCAAGTCTGTCAACCTGGACCAATGGACACAGGAACAGATACAGtgtgTTCAGGAGATGGGGAATGCCAAGGCCAGACGACTCTATGAAGCTTTCCTACCAGAATGTTTCATACGACCAGAGACTGACCAGTCAGCAGAGATGTTCATCAGGGACAAATATGAGAAGAAGAAGTACATGGACAAGATCCTAGATGTCAACAGGCTtagaAAAGAGAAGAGCTGTGAAAACATCCCCAAGGAGCCAGTGGTGTTTGAGAAGATGAAGTTGAAGAGAGAAAACAGCCCAAAGACACAGACCCAGTCTCCGTCTATCTCAGACCTCCTAGGACTTGatgatCCTGCTCCCCATGCTGCTATATCCAATGGTAGGTCCAGctctggagagagggggagtccTCTGGTAGCTAAGCCAGCTACGGTGCACTCTGACCTGAATCTATTcagctctctgcctgcctcttcCTCCACCAACACCACGccgGTGGGTAGCTCCATGCCCAGGGGTTGTGTGGCCACGTCGGTACCCGAGAACCTCAGCCTGTTCCTGGACTCAGCACCCAGACAGGAGGGCTCTAGGACAAAGATGTCTAAGgactccatcctctccctctatgcAACCACACCCACATCGCACCAGAACCTAGCTGCACGGGCTGGCCTGTACATGAACCCAGCCCAGCTGGGCTACTACGGATCATACCATTCCCTGGCCACGGAGGGGGGAGCGATGGGAGGAGCCATGGTGACATCACACTCAATGATGGCCCTGAGTGGTCAGCAGCAGAACGGCATGATGGGAGGGCAACAGCAAAGTGTTATGCGAGCTCAGCAGAATGGAATGGTGGCGGCACAACAGAATGGCTTTATGGCTCAACAGGGTGTCATGGGGCAAGCAGTCAACACATCCCCGTTCATGGCAGGAGTGCCACACAGCATGATAAATCATCAGCAAAGCATTATGGGAGCTCAGCAGAGTGTTATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGTGCGGCATGATGGGAGTTCAGCAGAGCGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGAGCTCAGCAGAGAGGCATGATGGGCGCTCAGCAGAGAGGCATGATGGGCGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGAGCTCATCAGAGCGGCATGATGGGATCTCAGCAGAGCGGCATGATGGGAGCTCAGCAGTGCGGCATGATGGGATCTCAGCAGAGCGGCATGATGGGAGTGCAACATAACGGCATCATGGGAGCACAGCAACAAAGCATCATTGGACGTCAACAGAAAGGCATGACATGCGGAGTGGCGTCCGTGCCTCAGCAGGTACAGCAGGATCAGTGCGCCATCACTCAGATGACCCAGCACATGGCGGGGGTGAACTTCTACGGCACCAACGCCATGACGGGATACGGCAGTCAGCACATCGGCGGACCAAAGACTCAAAGCTCCAACCACATGACGACGTCTCACGTCTGGAAGTGATGTCATCACCCGAAGAGGAAGTTGATGTCACTGAGCAGCAGTGGTGCTTGGGAAGGTTTCGGGGGAGTTTTCGAATGAACTTTCCATCAGACATTTTAGATAACatgggaggaggatgaggaagagaagtAGGGTGGGTAGTTTACTTAGGCGCGTTTtcgatctctcctctcctctcctctcctctccttatttcAGAGCCATTTCCATGCTTGCCTTCAGATCATTCTACGACCAATCAAAGGACAGGGCTCAGAGTTGAAGACATCACAGAGGTCATACTGAACTGGGACCACAGCATAGAATACATCTCATAtccagtgtgcgtgtgtgcgtgtgtgtgtgtggggggggggggggggggggggttgtgtgtatcAGCCTTTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCCGAAGAACTCATCCAACTGAACTATTCCCGAAGAACTCATCCAACTGAACTATTCCTAAAGAACTCATCCAACTGAACTATTCCTGAACTCTTCCTGAAGAACATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCCAAAGAACTCATCCAACTGAACTATTCCCGAAGAACTCATCCAACTGAACTATTCCCGAAGAACTCATCCAACTGAACTATTCCTGAAGAACTCATCCAACTGAACTATTCCTGATGAACTCATCTAACTGAACTATTCCTGAACTATTCTGGAAGAACTCCTCCAACTGAACTATTCCTGAAACTCATCCAACTGAACTATTTCTGATGAACTCATCCAACTAAACTATTCCTGAAGAACTCCTCTAACTATTCCTGAAAAACTCATCCAACTAATCTATTCCTGGTTTGAAACAGACTTCAGTTAGTTTAGTCTCCACCCTAGTTTGAATAGATCTGGGATGTATTccaaatggcactatattccctttatagggcactactttagaccagggtctatagggatctgctaaaaagtagtgaactatataggtaATGGATTCTTAGTCAATTGTCCTTTAAACAACGACCGGCTAATCAGAAACCAAAGATGACAGGAGAGCTTTATTATGGCTAGTAATTGCTAGGGCAGATGTGTTGGGTATTGTATTGCTATTGTACTAAACGATTAGCATACTAGTGATTTATACAATATTAGTTACTTTCAAACATGTAGAGGACATTTAAAGCAGTGCGATATATACATCACCAGTCAAAAGGTTCACAACACCgcctcattcaagagtttttctttatttgtactattttttacattgtagaataatagtgaagacatcaacactatgaaataacacatatgga

Function

NR:

description
PREDICTED: stromal membrane-associated protein 2-like

GO: NA

KEGG:

id description
K12486 SMAP; stromal membrane-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953659.1 True 3763 mRNA 0.47 10 73304371 73363731

Neighbor

gene id symbol gene type direction distance location
LOC110496752 LOC106589094 coding downstream 172932 73006005 ~ 73131439 (-)
LOC118941220 NA coding downstream 222475 73079404 ~ 73081896 (-)
csmd1a csmd2 coding downstream 1067618 72015921 ~ 72236753 (-)
LOC118941016 NA coding downstream 1360128 71943228 ~ 71944243 (-)
LOC118941015 LOC103363662 coding downstream 1429701 71847433 ~ 71874670 (-)
LOC110496760 NA coding upstream 25030 73388761 ~ 73393698 (-)
LOC110496758 LOC106530873 coding upstream 69984 73433715 ~ 73445162 (-)
LOC110489356 LOC106589108 coding upstream 391633 73755364 ~ 73763523 (-)
LOC110496905 LOC106593151 coding upstream 458277 73822008 ~ 74115567 (-)
LOC110487813 NA coding upstream 945751 74309482 ~ 74331094 (-)
G1580683 NA non-coding downstream 10065 73291106 ~ 73294306 (-)
G1580686 NA non-coding downstream 13438 73226696 ~ 73290933 (-)
G1580685 NA non-coding downstream 20517 73239657 ~ 73283854 (-)
G1580669 NA non-coding downstream 102390 73201761 ~ 73201981 (-)
G1580665 NA non-coding downstream 113089 73190966 ~ 73191282 (-)
G1580738 NA non-coding upstream 3698 73367429 ~ 73368508 (-)
G1580745 NA non-coding upstream 14798 73378529 ~ 73379246 (-)
G1580747 NA non-coding upstream 16768 73380499 ~ 73380781 (-)
G1580748 NA non-coding upstream 17727 73381458 ~ 73381668 (-)
G1580752 NA non-coding upstream 20120 73383851 ~ 73384053 (-)
G1580625 NA other downstream 255685 73047833 ~ 73048686 (-)
G1579954 NA other downstream 1089582 72214174 ~ 72214789 (-)
G1579715 NA other downstream 1666239 71636487 ~ 71638132 (-)
G1579672 NA other downstream 1785902 71517869 ~ 71518469 (-)
G1580844 NA other upstream 161551 73525282 ~ 73525595 (-)
G1581344 LOC106589111 other upstream 793574 74157305 ~ 74157747 (-)
G1581465 NA other upstream 943047 74306778 ~ 74307678 (-)
G1581622 NA other upstream 1082865 74446596 ~ 74446989 (-)

Expression


Co-expression Network