ldlrad4a (LOC106589113)


Basic Information

Item Value
gene id ldlrad4a
gene name LOC106589113
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 74496382 ~ 74540849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953668.1
cggagggaggaggggtggggtgtAAGCCTGCCCACACCAGGAGCACGGAACACAGCCATTCTTTTGAATTAATGCGAGAGGGACGCTGGAAAACATTTAAAGATGTGGGGTGTCTATTCACCATAGGTAACATCGCTACATCGTGACTAGGTTGGAATGACGTGAGAAATGTGGAACCATAGAGGCCGACTCTGACAGCGGGAGCTGCTGTACAAGTTGTCAGCCCTGTGTAGGGCCACTGTCGGCGGCTCTTTCCCGGCGTCCCGCTACTCCCGAGCCCCATGCAAAACACAACGGTACCGGGCAGCTCCATCAACTCTAACTCCAATGTCATTTGCTCCTGCAACTGCACTGGATCCCAGTCACAGGGGATGGATATATctgAACTGGAGTTTGTTCAGATAGTAATCATAATGGTGGTGATgacagtgatggtggtggtgattatCTGTCTGTTGAACCACAGGCTGTCTGCCCTGGCCTTCtttagcagacagacacacagccacgACCAGGACAGACAGCGGGATCAGGTCAACATGCAGCACGATGGCTGTGTGTGGCCAACCAACAGTTTGGTGATGCAGCAGGAAACCACAGAGGTGAGTGGGAAAAATgTGATGTTTGGGCCCAGGCCGACCCAGGAGAGGTTCAACCCTCCCTCCTTTATGCAACGGGAGCATTTCAGCCGCTTCCAGCCCACCTACCCCTACCTGCAGCAGGACATTGACCTGCCGCCCACCATCTGTCTTTCTGATGGGGAGGAGCTGCCGCCCTATAAAGGCCCATGTACCTTACAGCTAAGAGACCCAGAGCAGCAGCTGGAGCTGAGCAGAGCATCCATCAGGCCCCCCCCTAACAGGACCATCTTCCACAGCGACCTGATCCATGTTTACGTCCACAGTGGTGGCCCTCGACCCCCCAGCAGTAACGCTGGTGTCAGTGCCACTGAACGCATGGAGGGACTGCCTCCCACCTACAGTGAGGTCATGGGTCACTACCCAGGATCCTCTGTGTTTCACCACCAGAACCAGTACAGCAATAAAGAGCCGTTCGCCCAGTGGACAGGGAGCAAAGACAggacactgacagacagagacaggcagatgAGCAACGAAAGCACAACCACCACAGGCTCCTCTGGCTCTGGCAAGGTCAAGGACAAAGAGAAGGATAGGAACAAACcggtgtgaggggggggggggttgtagctggtctgtaccAAACAGGACCTACCCCTCTCACCTGAAGGGGAGTGGCCTCCTCTCAGCATTCCCCATGCACAATATGAAGAAGCCTGAGGAGCCAAGCTTACAAACACTCTTTTTGTATTCCTTCGTTCGGCATTCAAGAGCTGTGGGCTTCTGCTTGAACACTAAGGCTTCATAGctcatttcttgtttgtttatttttgtatgcTTTCATTTATTTAAATAAGATTGTTGACactgattttatttgaatgactGTAACACCCAGTTATAGAAGTTATGGCTTTTATtgtcttaaataaataaaaatcccagATCAGTGCACAAACCTTCAATCAGAATCAGAGTGCCACGATTCTGCTAAATCAACGGGATATATTATCATAAATCAAAAGCTGACCTAACTTATTGTTTAAAAACTTCTCCTAGTTTGATTGTTTATGTGGGCTCCAAATGTTTTGAAAGACTGGTTATTTTTCTGTTATTATCCACAACTCTGATCCAGCCTAACGTCCCCTGAAACTAACTCCAACACGGCAGTTCAGTTTAAAgacacactgagtataccaaacatttggaacaacttcctaatattgagttgcatccccaccctttgccctcagaagagcctcagttcatcagggcatggactctacaaggtgtcgaaagc
>XM_036953670.1
cggagggaggaggggtggggtgtAAGCCTGCCCACACCAGGAGCACGGAACACAGCCATTCTTTTGAATTAATGCGAGAGGGACGCTGGAAAACATTTAAAGATGTGGGGTGTCTATTCACCATAGGTAACATCGCTACATCGTGACTAGGTTGGAATGACGTGAGAAATGTGGAACCATAGAGGCCGACTCTGACAGCGGGAGCTGCTGTACAAGTTGTCAGCCCTGTGTAGGGCCACTGTCGGCGGCTCTTTCCCGGCGTCCCGCTACTCCCGAGCCCCATGCAAAACACAACGGTACCGGGCAGCTCCATCAACTCTAACTCCAATGTCATTTGCTCCTGCAACTGCACTGGATCCCAGTCACAGGGGATGGATATATctgAACTGGAGTTTGTTCAGATAGTAATCATAATGGTGGTGATgacagtgatggtggtggtgattatCTGTCTGTTGAACCACAGGCTGTCTGCCCTGGCCTTCtttagcagacagacacacagccacgACCAGGACAGACAGCGGGATCAGGTCAACATGCAGCACGATGGCTGTGTGTGGCCAACCAACAGTTTGGTGATGCAGCAGGAAACCACAGAGgTGATGTTTGGGCCCAGGCCGACCCAGGAGAGGTTCAACCCTCCCTCCTTTATGCAACGGGAGCATTTCAGCCGCTTCCAGCCCACCTACCCCTACCTGCAGCAGGACATTGACCTGCCGCCCACCATCTGTCTTTCTGATGGGGAGGAGCTGCCGCCCTATAAAGGCCCATGTACCTTACAGCTAAGAGACCCAGAGCAGCAGCTGGAGCTGAGCAGAGCATCCATCAGGCCCCCCCCTAACAGGACCATCTTCCACAGCGACCTGATCCATGTTTACGTCCACAGTGGTGGCCCTCGACCCCCCAGCAGTAACGCTGGTGTCAGTGCCACTGAACGCATGGAGGGACTGCCTCCCACCTACAGTGAGGTCATGGGTCACTACCCAGGATCCTCTGTGTTTCACCACCAGAACCAGTACAGCAATAAAGAGCCGTTCGCCCAGTGGACAGGGAGCAAAGACAggacactgacagacagagacaggcagatgAGCAACGAAAGCACAACCACCACAGGCTCCTCTGGCTCTGGCAAGGTCAAGGACAAAGAGAAGGATAGGAACAAACcggtgtgaggggggggggggttgtagctggtctgtaccAAACAGGACCTACCCCTCTCACCTGAAGGGGAGTGGCCTCCTCTCAGCATTCCCCATGCACAATATGAAGAAGCCTGAGGAGCCAAGCTTACAAACACTCTTTTTGTATTCCTTCGTTCGGCATTCAAGAGCTGTGGGCTTCTGCTTGAACACTAAGGCTTCATAGctcatttcttgtttgtttatttttgtatgcTTTCATTTATTTAAATAAGATTGTTGACactgattttatttgaatgactGTAACACCCAGTTATAGAAGTTATGGCTTTTATtgtcttaaataaataaaaatcccagATCAGTGCACAAACCTTCAATCAGAATCAGAGTGCCACGATTCTGCTAAATCAACGGGATATATTATCATAAATCAAAAGCTGACCTAACTTATTGTTTAAAAACTTCTCCTAGTTTGATTGTTTATGTGGGCTCCAAATGTTTTGAAAGACTGGTTATTTTTCTGTTATTATCCACAACTCTGATCCAGCCTAACGTCCCCTGAAACTAACTCCAACACGGCAGTTCAGTTTAAAgacacactgagtataccaaacatttggaacaacttcctaatattgagttgcatccccaccctttgccctcagaagagcctcagttcatcagggcatggactctacaaggtgtcgaaagc

Function

NR:

description
PREDICTED: protein TMEPAI-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953668.1 False 1881 mRNA 0.50 4 74496382 74540849
XM_036953670.1 True 1866 mRNA 0.50 4 74496382 74540849

Neighbor

gene id symbol gene type direction distance location
mc5ra LOC106589114 coding downstream 58438 74418135 ~ 74437944 (-)
LOC110487813 NA coding downstream 165288 74309482 ~ 74331094 (-)
LOC110496905 LOC106593151 coding downstream 380815 73822008 ~ 74115567 (-)
LOC110489356 LOC106589108 coding downstream 732859 73755364 ~ 73763523 (-)
LOC110496758 LOC106530873 coding downstream 1051220 73433715 ~ 73445162 (-)
G1581716 NA non-coding downstream 1026 74494753 ~ 74495356 (-)
G1581715 NA non-coding downstream 8198 74487476 ~ 74488184 (-)
G1581636 NA non-coding downstream 25761 74470338 ~ 74470621 (-)
G1581634 NA non-coding downstream 29183 74466959 ~ 74467199 (-)
G1581627 NA non-coding downstream 40167 74455951 ~ 74456215 (-)
G1581751 NA non-coding upstream 7079 74547928 ~ 74548252 (-)
G1581754 NA non-coding upstream 10467 74551316 ~ 74554576 (-)
G1581758 NA non-coding upstream 17499 74558348 ~ 74558594 (-)
G1581759 NA non-coding upstream 17931 74558780 ~ 74561935 (-)
G1581732 LOC106589117 non-coding upstream 29519 74570368 ~ 74574768 (-)
G1581629 NA other downstream 38066 74457682 ~ 74458316 (-)
G1581622 NA other downstream 49393 74446596 ~ 74446989 (-)
G1581465 NA other downstream 188704 74306778 ~ 74307678 (-)
G1581344 LOC106589111 other downstream 338635 74157305 ~ 74157747 (-)
G1581793 NA other upstream 67639 74608488 ~ 74613460 (-)

Expression


Co-expression Network