G1509188


Basic Information

Item Value
gene id G1509188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 712117 ~ 715516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1726302
ggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtatcctcttagataggggtcagactgtaggACcctcttagataggggtcagactgtagggTCCTCTTAGATAGAGGTCAgactgtagtatcctcttagataggggtcagactgtagtttcctcttagataggggtcagaTTGTCTGCAGTGTTggattagcctatgttagctcaactgtGCCtagggggacccaccaatccagTAGAGGTATTAATTAGGATCTCTACAGATCGGTTTCCCACTCGCGGGACTGTTGAGCTAATGTTCGCTAGTGTGATTAGCATGATTAGCATTAGcatgcactgtccaatttacagtagctattacagtgaaataataccatgctattgtttaaggagagtgcaatgttttgaacatgaaaagttattaataaacgaTTCAGGCACATTTTGGCCGTCTTGACAcgacattttgaacagaaatgaaaTGTTTCATTGGATCCGTTTATaaatttgcacacacactgctgccaaaatctaaattgcatctGGGCTGAAATAATACTaatattatggcctttctctctaaaaacaaacaaaaacatttttatttttattatctcttaccagatctattgtgttatattctccaacattagtttcacatttccacaaacgtcaatgtgtttccttttaaatggtatcagagatcttctgttgatcttctgttgaatctgaccattggttgtacagtcgtctcaaataaaactgtgaaggacctcggcgt
>TU1726303
ggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagggtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtgtcctcttagataggggtcagactgtagtatcctcttagataggggtcagactgtaggACcctcttagataggggtcagactgtagggTCCTCTTAGATAGAGGTCAgactgtagtatcctcttagataggggtcagactgtagtttcctcttagataggggtcagaTTGTCTGCAGTGTTggattagcctatgttagctcaactgtGCCtagggggacccaccaatccagTAGAGGTATTAATTAGGATCTCTACAGATCGGTTTCCCACTCGCGGGACTGTTGAGCTAATGTTCGCTAGTGTGATTAGCATGATTAGCATTAGcatgcactgtccaatttacagtagctattacagtgaaataataccatgctattgtttaaggagagtgcaatgttttgaacatgaaaagttattaataaacgaTTCAGGCACATTTTGGCCGTCTTGACAcgacattttgaacagaaatgaaaTGTTTCATTGGATCCGTTTATaaatttgcacacacactgctgccaaaatctaaattgcatctGGGCTGAAATAATACTaatattatggcctttctctctaaaaacaaacaaaaacatttttatttttattatctcttaccagatctattgtgttatattctccaacattagtttcacatttccacaaacgtcaatgtgtttccttttaaatggtatcagagatcttctgttgatcttctgttgaatctgaccattggttgtacagtcgtctcaaataaaactgtgaaggacctcggcgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1726302 False 993 lncRNA 0.42 4 712117 715516
TU1726303 True 993 lncRNA 0.42 4 712117 715516

Neighbor

gene id symbol gene type direction distance location
LOC110515393 LOC106575008 coding upstream 90678 589742 ~ 621439 (+)
LOC110515805 LOC106575000 coding upstream 141988 554930 ~ 570129 (+)
LOC110516182 LOC106575004 coding upstream 161630 540380 ~ 550487 (+)
LOC118941071 NA coding upstream 285986 422280 ~ 426131 (+)
LOC110528717 LOC106575929 coding upstream 622616 76903 ~ 89501 (+)
LOC118941073 LOC106575007 coding downstream 59334 774850 ~ 784873 (+)
LOC110495331 LOC106593605 coding downstream 74270 789678 ~ 792686 (+)
LOC118941054 NA coding downstream 138854 854370 ~ 859799 (+)
LOC118941055 NA coding downstream 1015708 1731224 ~ 1732090 (+)
tdrd3 LOC106592742 coding downstream 1662417 2377933 ~ 2453770 (+)
G1509175 NA non-coding upstream 80430 631430 ~ 631687 (+)
G1509070 NA non-coding upstream 93491 618212 ~ 618626 (+)
G1509069 NA non-coding upstream 97417 614161 ~ 614700 (+)
G1509067 NA non-coding upstream 110785 600592 ~ 601332 (+)
G1509205 NA non-coding downstream 52305 767821 ~ 768025 (+)
G1509207 NA non-coding downstream 55266 770782 ~ 771014 (+)
G1509218 NA non-coding downstream 77535 793051 ~ 793482 (+)
G1509221 NA non-coding downstream 80356 795872 ~ 796361 (+)
G1509068 NA other upstream 104910 606622 ~ 607207 (+)
G1509015 NA other upstream 267240 442803 ~ 444877 (+)
G1508979 NA other upstream 344686 364927 ~ 367431 (+)
G1508964 NA other upstream 376940 334432 ~ 335177 (+)
G1509212 NA other downstream 65273 780789 ~ 781203 (+)
G1509697 NA other downstream 672515 1388031 ~ 1389178 (+)
G1509914 NA other downstream 966776 1682292 ~ 1682858 (+)
G1510408 LOC106576654 other downstream 1818796 2534312 ~ 2534675 (+)

Expression


Co-expression Network