XLOC_003437 (ovgp1)


Basic Information

Item Value
gene id XLOC_003437
gene name ovgp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24027715 ~ 24032190 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006715
CTCAACCAAATCACATACAGTGTGTATCTTTTTTatgctctttttttcttttcagtagccTGTTCAAAACTGGTGTGTTACTTTACAAACTGGTCTCAGTACAGATCAGGAACTGCAAGATACCTTCCTGAAAATGTGGACCCTAACTTGTGTACTCATTTAATTTATGCTTTTGCTATTATCAACTATGCCAATAACATTGCAGGCAGTGAGTGGAATGATGTCGTCCACTATTCAACCTTCAATGCACATAAGAAACGaaatccaCAGCTGATAACCTTGTTGTCTGTCAGAGACCAGGACTCAAGTCAATTCTCTATTATGTTATCCAAGTGGATAAACCGCCAGACTTTCATCAAGTCTTCTATTGAGTTTCTGAGGAAATATAACTTTGACGGACTGGATTTGGACTGGGAAATGAAAAACACTTCAGAGATGCATCCAGAAGATAAGCTGAAATTCACTCTTCTGTGCAAGGAACTTCTGGAAGCATTTGTAGCTGAAAGCCTGAACAGTGATACAAGACTGATTCTAACAGCAACTGTTTCCGCACAAAAAGATGTTATTGAAAGGAGCTACATAATTCCAGAGATCTCAGAGTAA
>TCONS_00006716
CTCAGTACAGATCAGGAACTGCAAGATACCTTCCTGAAAATGTGGACCCTAACTTGTGTACTCATTTAATTTATGCTTTTGCTATTATCAACTATGCCAATAACATTGCAGGCAGTGAGTGGAATGATGTCGTCCACTATTCAACCTTCAATGCACATAAGAAACGaaatccaCAGCTGATAACCTTGTTGTCTGTCAGAGACCAGGACTCAAGTCAATTCTCTATTATGTTATCCAAGTGGATAAACCGCCAGACTTTCATCAAGTCTTCTATTGAGTTTCTGAGGAAATATAACTTTGACGGACTGGATTTGGACTGGGAAATGAAAAACACTTCAGAGATGCATCCAGAAGATAAGCTGAAATTCACTCTTCTGTGCAAGGAACTTCTGGAAGCATTTGTAGCTGAAAGCCTGAACAGTGATACAAGACTGATTCTAACAGCAACTGTTTCCGCACAAAAAGATGTTATTGAAAGGAGCTACATAATTCCAGAGATCTCAGAGTACTTGGACTTTATTAATGTCAAGACGTTTGACTTTCATACATATAAAGATGGCATTGCAAGACATCACAGTGCTTTGTACAGTGCCATGAGTGATGACAAGGATATCAAATCAAACACTGATTTTGCTCTGCAGTACTGGAGATCTCAGGGAGCTCCTGCTGAGAAGTTGTTGATGGGCTTCTCTACTTACGGACGCTCTTTTATCCTCAACTCCTCTCAGAACGGAGTCGGAGCCCCAGCCAATAAATTTGCTTCTCCTGGACCTCATACACAAGAGATAGGCTTGTGGGCTTACTATGAAATATGTCTTTTTCTAAATGGTGGTGTGGTACAGTGGATTGAAGACCAGAAAGTACCTTTTTCTGTGAAAGGCAATGACTGGGTGGGATTTGACAGTCTGAGAAGCTTCAATATTAAGACAAAATATCTACTGGAGCATGGCTTCGGGGGTGCGTTTGTGTGGGCTCTAGACCTGGATGATTTTTCTGGATATTTCTGTGGACAGGGCACCTACCCTTTAGTCAACAGCCTTAAGAAATCATTAATACATGGAATTGAATCGTCTTCCTCCATGACCAGCACCAACTTTTTCTTCAGTATTTTTGCAACAGCTGGAAAAGGCTCTTTGCCAACACCGATATGTGTGAAGATTGTCAGATCTTTTTCAGCACAGCAAAGTCTGTTTTGTGCAAACAGATCAGATGGACTATATTACAGAACGAATTCCCTCAACTCATTTTATAGCTGTAGTGAAGGAATAACAAATATCACCTGGTGCACCCCGTTCCATGC

Function

symbol description
ovgp1 Predicted to enable chitin binding activity and hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell.

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-140106-118 Predicted to enable chitin binding activity and hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell.

Ensembl:

ensembl_id ENSDARG00000075745

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006715 False 603 mRNA 0.38 4 24027715 24029711
TCONS_00006716 True 1300 mRNA 0.41 9 24027809 24032190

Neighbor

gene id symbol gene type direction distance location
XLOC_003436 NA coding upstream 3139 24015835 ~ 24024576 (+)
XLOC_003435 chia.2 coding upstream 18976 24001993 ~ 24008739 (+)
XLOC_003434 chia.1 coding upstream 27544 23993298 ~ 24000171 (+)
XLOC_003433 cntn2 coding upstream 40033 23933016 ~ 23987682 (+)
XLOC_003432 NA coding upstream 114216 23895529 ~ 23913499 (+)
XLOC_003438 zc3h11a coding downstream 2155 24034345 ~ 24044586 (+)
XLOC_003439 maf1 coding downstream 13989 24046179 ~ 24056609 (+)
XLOC_003440 NA coding downstream 28966 24061156 ~ 24083588 (+)
XLOC_003441 FP102969.1 coding downstream 83893 24116083 ~ 24151217 (+)
XLOC_003442 NA coding downstream 88101 24120291 ~ 24310645 (+)
XLOC_003369 CR854846.2 misc upstream 7904633 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11315719 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11333452 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11342116 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11347687 12679732 ~ 12680028 (+)
XLOC_003430 NA non-coding upstream 430044 23594349 ~ 23597671 (+)
XLOC_003428 BX571675.1 non-coding upstream 630330 23397270 ~ 23397385 (+)
XLOC_003426 NA non-coding upstream 1100527 22920469 ~ 22927188 (+)
XLOC_003443 NA non-coding downstream 144228 24176418 ~ 24177651 (+)
XLOC_003444 AL831791.1 non-coding downstream 146633 24178823 ~ 24178938 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000058_01418324_01423047 NA coding CI01000058 null 1417497 ~ 1423527 (-)