XLOC_003438 (zc3h11a)


Basic Information

Item Value
gene id XLOC_003438
gene name zc3h11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24034345 ~ 24044586 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006717
CTGACGTTTACAGTCATTTGTGTAAGCACTTTCCTGCTGGGCAGCGCGGGCGCCATTTTGTTCGTCTGTAAAACCGAGAAGAGAAAAGTCCTGTACTGGAGAGCCTACGTGCATCAACCCGAACATACTTAATTCCACTCGGTATAAACTGGATCCAAACAGTGCGGAGCGACTCTTCAAGGAGTGCTTGAGATTGTGCCGGGGAACATCTCAGCCACTGCAGGGAGATTGCAAGTGTCCAGGACGAGATCCCACCTCCTGACCCTGAAGAGTACAAACCTGTTCCAGAATGACCTTGCAAGGAGATGATTGCTACTTTTTCTACTATTCTACCTGTACGAAGGGTGACAGTTGCCCTTTTCGACACTGTGAGGCTGCCATGGGTAGTGAAACGGTTTGCAACCTGTGGCAAGAGCAAAGATGCTTCCGTAACGTCTGCAAGTTTCGACACATGGAAATAGATAAAAACCGAAAGGAAATTGCCTGCTATTGGGAGAATCAGCCGGCTGGATGCCAGAAGCCTCATTGTGCTTTCCATCATGAGAAGCCACGCATCATCAATGGCAACTACTTGGCTCCAGATAAGGggcaGGTAGCGCGAAAGGACAATGAAGAGGCCCCGCTTGAGGAGAAGGTGAACCAAGTCCCTGCACCCAGTGCAAACCCCACTAACCCACAGCTCAGAGGAGTCAAGAGAACTGAGACCCAAGAGAATGTGCCCAGCCCTACTCATCCACCAGTGGTCATTAACCCTGTGGATGACGATGATGAAGATGATCAGTTTTCAGAGGAAGGAGACGAATCTTTAGGAGTCTCACCCCGGAAACTGGTCTCAAGCAAACATGACTCTCTGGACTTTGGTATCCAGACGTTAGAGGAGATCAGGCTGAGGAAAGCACTTATGTCCAACCTAAAGAAAGCTAGGCAGAGCACAGTGCAAGGCTTAGCCCAAATCAGTAGACCTACTGTTGAAAAGGAAAACATTCAGTCTCTCTCACGTCTGGAAGTTAACAATGTCAAGATTGATTCATCTGGTAAAGAAGTTGGAAAAAGACGAATTGCAGACAGGCTTGGCAAAAGAATTTTGGAAAGAGATGTCCCTGGGGAAGAAGGCCCACCTTTAAAACGAAGCCTTGCTGAACGTCTCGGTGGAGTTGTTGAATCCTCGACAGATGTGCTAACAAATAAATCTCATAAACCAGTGCACGAAAGACTTGGATTGACAACTGACATGAGTAGCGGTGACAGCGAGCCAAAATCATCCGGAGACATTCGTATAAAAACCCTAGAGGAGATTCGGCAAGAGAAGGCAGCCAAAAACCTCAGCAAAAGTAAAGTTGTTCGTGTTGTGAAAGAAGTGCCGCAGAAAGAGATCAGCCCCTCCAAAAAAAGTGTCAAACCTGTTGCTGGACCTCAAGTTAAAACTTTCTCTGAAATCCTTcacgaaaagaaaagaaaaatgcagGAGAAAAAAGAGCAGGAAATAAACAAAGCTGACAAAAGCCCAGAGAGGAGCGAAGAACCCTCTTCTGCCAGAGCCACTAATAAGACCACTGTGACAACTGGGGAGGTCAGAGTAAAAACACTAGAGGAAATCCGCAGGGAAAAAGCAGCTCGGATGCAAACACAGCTTGGAGAGACCACAGACAACAAGACTCCAACCTCTAGTGAAGCAGAACTAAGTGGACCTTCAAAGAGGCGCATTCTACGCATAAACAAAACCTCACcTGCTGCAGTAACTCAGACAAAGCCAGATGCCTCTGAGAAGAAACCAGAACCTGCAACTGAGGCAAATGGAAAAATCGAACCATCCAGCGAGGTTGTCAAAGTGAAGACATTTGAGGAAATCATGCGAGAGAAGAGACTCCGCAAGCTACAGGAAGAGCAGGTCACCTCCAGCAACCAGAAAGATGTAGGAGCGTCTGAATCACCGCCTGCCCCTGAACCCTCTGTCCAGCCTCAAACCACAGTCAGACAGAGGATCACCTTTAAAGCCAAGCCCAGTCCACCTGTCTCTGATGCTGTGGTGATCGAGAAAAGCTCACCTGAGCGCTCTGAAGACAGCACTCCATCAACTAACACACCAAAGCCCTCAACCTCACCAGTCAGACCAGTGCGGATAGCAGAGGGTATCGTTACACCAGCTGAGACCAAAGTGAGACCCAAAGTGAATGTGAAGCCATCAGTAGTGAAGCCGGCAGCCCCGTCTGTCCAGAAGAGGAAAGCTGCaaaagttcattctgctgttgctgAAGTCAAGCCTCTGAACACTACCTGTCAAACACCTTCCTCGCCAGTGATGCCCAACAAGCGCCTTAAGATGGCGTCACCCACCTGTAAGAAAGTGGTTCAGTCCGACACTCAGCAGGTGCCCTCCAACACAGAGAATATTCAGATGATGCCTGTCAGCTGTTCTGAACCCGCAAGCACTACATCAGTGGAGACTGTTGTGGTCCCACATAGCCCTGTGATCAAAACCCCCAGCATGCAACGCTCTCGGCGGTGCAGCACCACTTCTGGACGTCCTCCTGTTGTTACTAGTTCATCAATGGATGACTTTGAAGACCTGTTGGATGAATTTACCGATGATCGACTTGAAGATGAGTTGGAACTGGATTCAGGCAAAGGAGAGGACGACCTTCTTTTAGAGCTTTCAGAGATGATTGACAGTTAAAAACTAAAAGCATCATCTCGTCACTTAAAAAACACTGCCTCTATATAcagcattttaaattaaatttaattttcaaCTACAATAGATTTGTTTTAATGTTCCTTTTTAGATTTTTCTTGTCGATGTAAATATAATTTCCTCATTGTCAGAAAGTGCTTGAGAAACACCAGTTATGTTCAAAACGAGTCCTTTCGGTTTCTTTTAGTTGACAATGTAAagctgtcaaaagaaaaaaaagttcttgCAGGTATTACCAAgccattattatcatcatcatcagacaGCCTCAGGTATAATGATTGTGTTGGAAGTTGCGTTATAGCACTATCTCTCATCATGTGTTACAGAGACAGGAAGTTTTCAGTTGTGTACTGTGTATGCCGAAAAATAGCTTTTTATTAGAGATGGACAGCAAGGACATGTTTTCTTGTGTCATATGTATGATCTGAGTCATTAAATGTTTTTTGGCCgtcaatgttgttgttttaataggtgattccctcaCCTTTACTGCTTAATGATTGGACAGAAGGCTGAAGGTCatggttgttttttgtttgagTTGTGCAGAAGAAATCCTATCATAGATTTTATGCTATGCTTCATTCCCTTGGGGGACCTTCTCTACATTTTTCACCTTGTGAAATAAACGTGAGTTTATTTTagcaattagttttttattagaCTTCTGAATGCAACATATAGGTGTGAAGCAGCTGGTTCTCAGGGATAAATACTTTGTTCATCTTTTCTTGcgtgtgttttctttttgtatttccTCTTCTGTGTCgttgttttaattcattttcatttactgACATCATGCATTAATGGCATGTGataatgttgtttgttttgtctgcctTACCTGAGTTACGCCTCTTCAGAACCATCTTTGTAAATAAAATGTCTCTATGAGAAAAA
>TCONS_00006718
GCGGAGCGACTCTTCAAGGAGTGCTTGAGATTGTGCCGGGGAACATCTCAGCCACTGCAGGTGAACGAAGTTCTTGCAACGCTTTCACTCTCTTACCAGTTCTTAAATATCCTCCACCATTTTACGCCATTCAAGACAGAATGTGAAAGTGAAAAAATGTGGATCAACAGGAGCATGAATAGACTTCTAACACTCTAAATAGGGAGATTGCAAGTGTCCAGGACGAGATCCCACCTCCTGACCCTGAAGAGTACAAACCTGTTCCAGAATGACCTTGCAAGGAGATGATTGCTACTTTTTCTACTATTCTACCTGTACGAAGGGTGACAGTTGCCCTTTTCGACACTGTGAGGCTGCCATGGGTAGTGAAACGGTTTGCAACCTGTGGCAAGAGCAAAGATGCTTCCGTAACGTCTGCAAGTTTCGACACATGGAAATAGATAAAAACCGAAAGGAAATTGCCTGCTATTGGGAGAATCAGCCGGCTGGATGCCAGAAGCCTCATTGTGCTTTCCATCATGAGAAGCCACGCATCATCAATGGCAACTACTTGGCTCCAGATAAGGggcaGGTAGCGCGAAAGGACAATGAAGAGGCCCCGCTTGAGGAGAAGGTGAACCAAGTCCCTGCACCCAGTGCAAACCCCACTAACCCACAGCTCAGAGGAGTCAAGAGAACTGAGACCCAAGAGAATGTGCCCAGCCCTACTCATCCACCAGTGGTCATTAACCCTGTGGATGACGATGATGAAGATGATCAGTTTTCAGAGGAAGGAGACGAATCTTTAGGAGTCTCACCCCGGAAACTGGTCTCAAGCAAACATGACTCTCTGGACTTTGGTATCCAGACGTTAGAGGAGATCAGGCTGAGGAAAGCACTTATGTCCAACCTAAAGAAAGCTAGGCAGAGCACAGTGCAAGGCTTAGCCCAAATCAGTAGACCTACTGTTGAAAAGGAAAACATTCAGTCTCTCTCACGTCTGGAAGTTAACAATGTCAAGATTGGTTCGTACTAGTGgtacaaaaatgttgttgttgttgttgttggtagaatcaaacagtttatttttctttaattttgtgCTGCAGATTCATCTGGTAAAGAAGTTGGAAAAAGACGAATTGCAGACAGGCTTGGCAAAAGAATTTTGGAAAGAGGTGTGTTTATGAAAACATTTGATTTGGTTGCATGGGTGGgcagtttttgggtgaaccaacCATTGAAGACCAGACCTACTTTCACTCTTTTGGTTGTTTTTAAGTGGACGTTACCCATAATGGGCAGCCAAAGTagcattaaaatattgtttaattatcattttcaattaaccaaaatatttttatcaatttagcACATCATTAAAGCGTTTTCAGAGatgttttcatttgatttaaGATGTCCCTGGGGAAGAAGGCCCACCTTTAAAACGAAGCCTTGCTGAACGTCTCGGTGGAGTTGTTGAATCCTCGACAGATGTGCTAACAAATAAATCTCATAAACCAGTGCACGAAAGACTTGGATTGACAACTGACATGAGTAGCGGTGACAGCGAGCCAAAATCATCCGGAGACATTCGTATAAAAACCCTAGAGGAGATTCGGCAAGAGAAGGCAGCCAAAAACCTCAGCAAAAGTAAAGTTGTTCGTGTTGTGAAAGAAGTGCCGCAGAAAGAGATCAGCCCCTCCAAAAAAAGTGTCAAACCTGTTGCTGGACCTCAAGTTAAAACTTTCTCTGAAATCCTTcacgaaaagaaaagaaaaatgcagGAGAAAAAA
>TCONS_00006719
GAAATCCTTcacgaaaagaaaagaaaaatgcagGAGAAAAAAGAGCAGGAAATAAACAAAGCTGACAAAAGCCCAGAGAGGAGCGAAGAACCCTCTTCTGCCAGAGCCACTAATAAGACCACTGTGACAACTGGGGAGGTCAGAGTAAAAACACTAGAGGAAATCCGCAGGGAAAAAGCAGCTCGGATGCAAACACAGCTTGGAGAGACCACAGACAACAAGACTCCAACCTCTAGTGAAGCAGAACTAAGTGGACCTTCAAAGAGGCGCATTCTACGCATAAACAAAACCTCACcTGCTGCAGTAACTCAGACAAAGCCAGATGCCTCTGAGAAGAAACCAGAACCTGCAACTGAGGTGTGACATAGAAAAATAGACAATAAAGCAGATTTACGAGTATATTATGAGAATTTATAACCTATTCTTTAACTTGTAGGCAAATGGAAAAATCGAACCATCCAGCGAGGTTGTCAAAGTGAAGACATTTGAGGAAATCATGCGAGAGAAGAGACTCCGCAAGCTACAGGAAGAGCAGGTCACCTCCAGCAACCAGAAAGATGTAGGAGCGTCTGAATCACCGCCTGCCCCTGAACCCTCTGTCCAGCCTCAAACCACAGTCAGACAGAGGATCACCTTTAAAGCCAAGCCCAGTCCACCTGTCTCTGATGCTGTGGTGATCGAGAAAAGCTCACCTGAGCGCTCTGAAGACAGCACTCCATCAACTAACACACCAAAGCCCTCAACCTCACCAGTCAGACCAGTGCGGATAGCAGAGGGTATCGTTACACCAGCTGAGACCAAAGGTATGAGTCTAACCTGTCAGCTGCTTTCTTTAAATATGAGTTATATGTA

Function

symbol description
zc3h11a Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A).

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0000346 transcription export complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3272 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A).

Ensembl:

ensembl_id ENSDARG00000009754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006717 False 3598 mRNA 0.45 17 24034345 24044586
TCONS_00006718 False 1775 lncRNA 0.44 8 24035804 24039174
TCONS_00006719 True 852 lncRNA 0.46 2 24039133 24040070

Neighbor

gene id symbol gene type direction distance location
XLOC_003437 ovgp1 coding upstream 2155 24027715 ~ 24032190 (+)
XLOC_003436 NA coding upstream 9769 24015835 ~ 24024576 (+)
XLOC_003435 chia.2 coding upstream 25606 24001993 ~ 24008739 (+)
XLOC_003434 chia.1 coding upstream 34174 23993298 ~ 24000171 (+)
XLOC_003433 cntn2 coding upstream 46663 23933016 ~ 23987682 (+)
XLOC_003439 maf1 coding downstream 1593 24046179 ~ 24056609 (+)
XLOC_003440 NA coding downstream 16570 24061156 ~ 24083588 (+)
XLOC_003441 FP102969.1 coding downstream 71497 24116083 ~ 24151217 (+)
XLOC_003442 NA coding downstream 75705 24120291 ~ 24310645 (+)
XLOC_003443 NA coding downstream 131832 24176418 ~ 24177651 (+)
XLOC_003369 CR854846.2 misc upstream 7911263 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11322349 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11340082 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11348746 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11354317 12679732 ~ 12680028 (+)
XLOC_003432 NA non-coding upstream 120846 23895529 ~ 23913499 (+)
XLOC_003430 NA non-coding upstream 436674 23594349 ~ 23597671 (+)
XLOC_003428 BX571675.1 non-coding upstream 636960 23397270 ~ 23397385 (+)
XLOC_003426 NA non-coding upstream 1107157 22920469 ~ 22927188 (+)
XLOC_003444 AL831791.1 non-coding downstream 134237 24178823 ~ 24178938 (+)

Expression


Co-expression Network