G1511175 (pcdh9)


Basic Information

Item Value
gene id G1511175
gene name pcdh9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 3745782 ~ 3823208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1728930
GCTTGGTATAACGTTATGAAGGCACAGGACACAAAGTGGTCGTATATGGACAACAAAAATGAATTTAGGTTGTAGTACTACTATTCAATTGTACTCAACTAATCACAATTTTAATCAAATGTTGTACAAATAATGAGTCAAAGTTAGATCAAACACATATAGCTCATTTACAAATATATTGCTGTTGAATAGTAACattagttgttttttttataattataattttaatttttttttctgCGGAAAAGTTTGCAATCTTTTTGTTTCCCATCATGTAAAAATCAAGCGTTATACGTCCATGATACAAAATTTATTTTGAAAAAATACGTTTGCCATAGTAGTTGAATGAAAGGAAATCAGACTTTGGGTCAACATTGTGCATCATTTTGTAACGGTTGAATATGTGTTTTCCGTAATACCCCCAACACAACAGGCCTTATATGAGTATGTGAATTATTATTTTAGATTTCCAATATGCCCCCCCCCCACGCCTTTCTTTTAACAAAAAGATTGAAAGCCAAAATGTATAGGGCACATCCTAAATGGCACACTGCTCCCTATTAGTATACTTCCTGGTCAGAAGCAGCACTGTATAGGTGATAAGATGCCATTGGAAAccatattgtgatgtcataaggGGACTGCCATGGATCGGCGTTTTAGATCCATGTGATGTCATAAGGGGACCGCCACGGATCGCTGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCAGAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGCGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGGCAGTATTACATCAACTGGGTTAGTATCACACGTCCTATTTACAAAACACACAGACTATTGACAGACTAGACAAGTGTTCACTAACAGTGTTATCAATCAGAACGACGCACGCCTTCCTATACTggaattgtgtttgtgtgtgtgtgtgggggggGTTAAGAGATACACAAAGCCTCTCACTAGCCTGCTGTAAACACGTTGACCTGTCTTCCCCATCACAGCCTCTCACTACCCACATTGACCTGTCTTCCCCGTCACAGCCTCTCACTACCCACATTGACCTGTCTTCCCCATCACAGCCTCTCACTACCCACATTGACCTGTCG
>TU1728931
GCTTGGTATAACGTTATGAAGGCACAGGACACAAAGTGGTCGTATATGGACAACAAAAATGAATTTAGGTTGTAGTACTACTATTCAATTGTACTCAACTAATCACAATTTTAATCAAATGTTGTACAAATAATGAGTCAAAGTTAGATCAAACACATATAGCTCATTTACAAATATATTGCTGTTGAATAGTAACattagttgttttttttataattataattttaatttttttttctgCGGAAAAGTTTGCAATCTTTTTGTTTCCCATCATGTAAAAATCAAGCGTTATACGTCCATGATACAAAATTTATTTTGAAAAAATACGTTTGCCATAGTAGTTGAATGAAAGGAAATCAGACTTTGGGTCAACATTGTGCATCATTTTGTAACGGTTGAATATGTGTTTTCCGTAATACCCCCAACACAACAGGCCTTATATGAGTATGTGAATTATTATTTTAGATTTCCAATATGCCCCCCCCCCACGCCTTTCTTTTAACAAAAAGATTGAAAGCCAAAATGTATAGGGCACATCCTAAATGGCACACTGCTCCCTATTAGTATACTTCCTGGTCAGAAGCAGCACTGTATAGGTGATAAGATGCCATTGGAAAccatattgtgatgtcataaggGGACTGCCATGGATCGGCGTTTTAGATCCATGTGATGTCATAAGGGGACCGCCACAATCGTCGTTCTAGATCCATGTGATGTCATAAGGGGAACGCCACGGATCGCTGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGCGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGGCAGTATTACATCAACTGGGTTAGTATCACACGTCCTATTTACAAAACACACAGACTATTGACAGACTAGACAAGTGTTCACTAACAGTGTTATCAATCAGAACGACGCACGCCTTCCTATACTggaattgtgtttgtgtgtgtgtgtgtggggggggctaATTacgtcccaaatcgcaccctattcccctatgtagtgcactacttttgcccaagCCTTAGGAccttggttaaaagtagtgcactaaataggtaaTAGGGTACTATTTTCGGCGTAGCCTGTAACTCCGTTTTTCTTTGATTGTGTAGATTAATATAGTCTCAAACAAACTCAATAACAACCACGTCACAATATTGGAATATATTGGTCAGACATAATATTGTTgatcattttttatatttttctgtTGAGTATATGAATTCCTGTTTAAGGTATTCTTCCGTTTTTTTTTCCCAGGTGGCCTGGATCGTGTTCTTCCTGTTTCCCAGGTGGATTCGACCGCCCTTTTTTCCCAGCCATCAGAGTGTGATGAGGAAATGTTTATGTTTATGGGGGCGGGGCTTCGTCCATCAAAAGGGAATCCCAAAAGACGTTCTCTTGCGCCGTCTATCCATCCAACGCCAAAAAAGTTGAATTGTAGAGTACACTGCATCAGTACTAGTCTAGTGGCCTACGTAGCACATGTAACTATCACATAGCACAAGCATCGACTTAAATCAAATAGTACGaacaagaaagaaaaaaaagatagaaaaaaaaaactcttgaAACTTGCGTCATCTGTCCTGTTCAGATTATCCAATCGCAGCCCTGTTTAGATTGGCTGCCTCCAATCAGAGCTCCTTTTATAGCTGGTGTTCCTTCGAAGAGTCTGGGCCAGTGGTAGGCTGGTAGGATTTCAAACTAGCCAATGGGATGTCAGCCATGTGGCCACTGGTGCTGAAGTGTCCCTCCCCGCTGCCAAATTGCTTCTTGTCACAAAACTGGTCCCGCCCACTATCGGTCTTCCAGGTCCGGGTCAACGTAGTATGGCCGTTGAGCAGTTTCTCTTTGGCCCACTCTTTCTGGGTGGCGAAGTTGGACACTGGAGACTTGGGCTGGCTGTAGGAGCCGAGGGTAGGGGGCATCCAGCAGTTGTCAGAGTGGCCAAGCACCAAACACTCCTGGGTACACATCTCTGTAGCTTCCACTAGGCCTCTGGGTCCCAGG
>TU1728932
GCTTGGTATAACGTTATGAAGGCACAGGACACAAAGTGGTCGTATATGGACAACAAAAATGAATTTAGGTTGTAGTACTACTATTCAATTGTACTCAACTAATCACAATTTTAATCAAATGTTGTACAAATAATGAGTCAAAGTTAGATCAAACACATATAGCTCATTTACAAATATATTGCTGTTGAATAGTAACattaGTTTTTTTTTA
>TU1728933
GCTTGGTATAACGTTATGAAGGCACAGGACACAAAGTGGTCGTATATGGACAACAAAAATGAATTTAGGTTGTAGTACTACTATTCAATTGTACTCAACTAATCACAATTTTAATCAAATGTTGTACAAATAATGAGTCAAAGTTAGATCAAACACATATAGCTCATTTACAAATATATTGCTGTTGAATAGTAACattagttgttttttttataattataattttaatttttttttctgCGGAAAAGTTTGCAATCTTTTTGTTTCCCATCATGTAAAAATCAAGCGTTATACGTCCATGATACAAAATTTATTTTGAAAAAATACGTTTGCCATAGTAGTTGAATGAAAGGAAATCAGACTTTGGGTCAACATTGTGCATCATTTTGTAACGGTTGAATATGTGTTTTCCGTAATACCCCCAACACAACAGGCCTTATATGAGTATGTGAATTATTATTTTAGATTTCCAATATGCCCCCCCCCCACGCCTTTCTTTTAACAAAAAGATTGAAAGCCAAAATGTATAGGGCACATCCTAAATGGCACACTGCTCCCTATTAGTATACTTCCTGGTCAGAAGCAGCACTGTATAGGTGATAAGATGCCATTGGAAAccatattgtgatgtcataaggGGACTGCCATGGATCGGCGTTTTAGATCCATGTGATGTCATAAGGGGACCGCCACAATCGTCGTTCTAGATCCATGTGATGTCATAAGGGGAACGCCACGGATCGCTGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCAGAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGCGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGTGATGTCATAAGGGGAGTTCTAGATCCATGGCAGTATTACATCAACTGGGTTAGTATCACACGTCCTATTTACAAAACACACAGACTATTGACAGACTAGACAAGTGTTCACTAACAGTGTTATCAATCAGAACGACGCACGCCTTCCTATACTggaattgtgtttgtgtgtgtgtgtgggggggGTTAAGAGATACACAAAGCCTCTCACTAGCCTGCTGTAAACACGTTGACCTGTCTTCCCCATCACAGCCTCTCACTACCCACATTGACCTGTCTTCCCCGTCACAGCCTCTCACTACCCACATTGACCTGTCTTCCCCATCACAGCCTCTCACTACCCACATTGACCTGTCG

Function

symbol description
pcdh9 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system.

NR:

description
PREDICTED: polycystic kidney disease protein 1-like 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1728930 False 1312 lncRNA 0.40 3 3745782 3823208
TU1728931 False 2178 lncRNA 0.42 2 3745782 3748020
TU1728932 False 211 lncRNA 0.29 2 3745782 3795867
TU1728933 True 1356 lncRNA 0.40 2 3745782 3823208

Neighbor

gene id symbol gene type direction distance location
LOC118941057 NA coding upstream 445554 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 531328 3214038 ~ 3214454 (+)
tdrd3 LOC106592742 coding upstream 1292012 2377933 ~ 2453770 (+)
LOC118941055 NA coding upstream 2013692 1731224 ~ 1732090 (+)
LOC118941054 NA coding upstream 2885983 854370 ~ 859799 (+)
LOC118941040 LOC106593609 coding downstream 794880 4618088 ~ 4624857 (+)
LOC110516278 LOC106600620 coding downstream 830833 4654041 ~ 4748243 (+)
LOC110528775 LOC106575958 coding downstream 1057460 4880668 ~ 4933600 (+)
LOC110495595 LOC106574881 coding downstream 1072706 4895914 ~ 5043592 (+)
LOC118941222 NA coding downstream 1160752 4944941 ~ 5000801 (+)
G1511192 NA non-coding upstream 23351 3720140 ~ 3722431 (+)
G1511191 NA non-coding upstream 30040 3715266 ~ 3715742 (+)
G1511188 NA non-coding upstream 36970 3706028 ~ 3708812 (+)
G1511163 NA non-coding upstream 79672 3665715 ~ 3666110 (+)
G1511159 NA non-coding upstream 81352 3661247 ~ 3664430 (+)
G1511220 NA non-coding downstream 4353 3827561 ~ 3827919 (+)
G1511221 NA non-coding downstream 5388 3828596 ~ 3832354 (+)
G1511233 NA non-coding downstream 41866 3865074 ~ 3865297 (+)
G1511237 NA non-coding downstream 46810 3870018 ~ 3870250 (+)
G1511256 NA non-coding downstream 71951 3895159 ~ 3895509 (+)
G1510639 NA other upstream 871616 2872394 ~ 2874290 (+)
G1510527 NA other upstream 1036035 2708713 ~ 2709747 (+)
G1510524 LOC106597055 other upstream 1040285 2704842 ~ 2705497 (+)
G1510408 LOC106576654 other upstream 1211107 2534312 ~ 2534675 (+)
G1511398 NA other downstream 458208 4281416 ~ 4284944 (+)
G1512020 NA other downstream 786810 4610018 ~ 4617952 (+)
G1512113 NA other downstream 1042787 4865995 ~ 4868008 (+)
G1512182 NA other downstream 1280879 5104087 ~ 5106088 (+)

Expression


Co-expression Network