G1511871


Basic Information

Item Value
gene id G1511871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4561573 ~ 4564497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729839
ctgtaaaacaacacctatcatactactatgactgatcctataaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatgctactatgactgaccctgtacaacaacacctatcataccactatgactgaccctgtaaacaacacctatcacactactatgactgaccctgtacaacaacacctatcatactactatgactgaccctgtaaaacacctatcatactactatgactgaccctgtaaaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtacaacaacacctattatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgac
>TU1729842
ctgtaaaacaacacctatcatactactatgactgatcctataaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgacactgtaaaacaacacctatcatactactatgactgaccctgtaaaacaa
>TU1729844
ctgtaaaacaacacctatcatactactatgactgatcctataaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcataccactatgactgaccctgtaaacaacacctatcacactactatgactgaccctgtacaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729839 False 554 lncRNA 0.39 4 4561573 4564497
TU1729842 False 240 lncRNA 0.37 3 4561573 4563556
TU1729844 True 405 lncRNA 0.38 3 4561573 4563900

Neighbor

gene id symbol gene type direction distance location
LOC118941057 NA coding upstream 1261345 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 1347119 3214038 ~ 3214454 (+)
tdrd3 LOC106592742 coding upstream 2107803 2377933 ~ 2453770 (+)
LOC118941055 NA coding upstream 2829483 1731224 ~ 1732090 (+)
LOC118941054 NA coding upstream 3701774 854370 ~ 859799 (+)
LOC118941040 LOC106593609 coding downstream 53591 4618088 ~ 4624857 (+)
LOC110516278 LOC106600620 coding downstream 89544 4654041 ~ 4748243 (+)
LOC110528775 LOC106575958 coding downstream 316171 4880668 ~ 4933600 (+)
LOC110495595 LOC106574881 coding downstream 331417 4895914 ~ 5043592 (+)
LOC118941222 NA coding downstream 419463 4944941 ~ 5000801 (+)
G1511855 NA non-coding upstream 45186 4514410 ~ 4516387 (+)
G1511853 NA non-coding upstream 47574 4512351 ~ 4513999 (+)
G1511846 NA non-coding upstream 57726 4503647 ~ 4503847 (+)
G1511471 NA non-coding upstream 69659 4486978 ~ 4491914 (+)
G1511461 NA non-coding upstream 99799 4461143 ~ 4461774 (+)
G1512004 NA non-coding downstream 10034 4574531 ~ 4601843 (+)
G1512005 NA non-coding downstream 22356 4586853 ~ 4637099 (+)
G1512023 NA non-coding downstream 50027 4614524 ~ 4615064 (+)
G1512024 NA non-coding downstream 51091 4615588 ~ 4616222 (+)
G1512027 NA non-coding downstream 64238 4628735 ~ 4629158 (+)
G1511398 NA other upstream 276629 4281416 ~ 4284944 (+)
G1510639 NA other upstream 1687407 2872394 ~ 2874290 (+)
G1510527 NA other upstream 1851826 2708713 ~ 2709747 (+)
G1510524 LOC106597055 other upstream 1856076 2704842 ~ 2705497 (+)
G1510408 LOC106576654 other upstream 2026898 2534312 ~ 2534675 (+)
G1512020 NA other downstream 45521 4610018 ~ 4617952 (+)
G1512113 NA other downstream 301498 4865995 ~ 4868008 (+)
G1512182 NA other downstream 539590 5104087 ~ 5106088 (+)
G1512205 NA other downstream 678237 5242734 ~ 5243427 (+)

Expression


Co-expression Network