G1512027


Basic Information

Item Value
gene id G1512027
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 4628735 ~ 4629158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1730008
catatgagatgagtaatgtagggtatgtaaacatataaatgGCATTAGACCAGTATGAGctttaccctggtttcatgtggaatcactccaaCAGCATTATGAGCTTTACCCTGGTTTAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttcatgtggaatcactccaaCTATACCACAATGCAGCATGTTTTAGTGAGACAGCCAATGCTAATTCTCTTGGGCTGAGTTCCAAACAG
>TU1730009
catatgagatgagtaatgtagggtatgtaaacatataaatgGCATTAGACCAGTATGAGctttaccctggtttcatGTGGAATCACTCCAACAgcattatgaactttaccctggtttAAGGTGGAATCACTCCAACAGCATTATGAACTTTACTCTGGTTTAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttcatgtggaatcactccaaCTATACCACAATGCAGCATGTTTTAGTGAGACAGCCAATGCTAATTCTCTTGGGCTGAGTTCCAAACAG
>TU1730010
catatgagatgagtaatgtagggtatgtaaacatataaatgGCATTAGACCAGTATGAGctttaccctggtttcatGTGGAATCACTCCAACAgcattatgaactttaccctggtttAAGGTGGAATCACTCCAACAgcattatgaactttaccctggtttcatgtggaatcactccaaCTATACCACAATGCAGCATGTTTTAGTGAGACAGCCAATGCTAATTCTCTTGGGCTGAGTTCCAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1730008 False 292 lncRNA 0.41 2 4628735 4629158
TU1730009 False 292 lncRNA 0.40 3 4628735 4629158
TU1730010 True 248 lncRNA 0.40 3 4628735 4629158

Neighbor

gene id symbol gene type direction distance location
LOC118941040 LOC106593609 coding upstream 3878 4618088 ~ 4624857 (+)
LOC118941057 NA coding upstream 1328507 3299441 ~ 3300228 (+)
LOC118941056 NA coding upstream 1414281 3214038 ~ 3214454 (+)
tdrd3 LOC106592742 coding upstream 2174965 2377933 ~ 2453770 (+)
LOC118941055 NA coding upstream 2896645 1731224 ~ 1732090 (+)
LOC110516278 LOC106600620 coding downstream 24883 4654041 ~ 4748243 (+)
LOC110528775 LOC106575958 coding downstream 251510 4880668 ~ 4933600 (+)
LOC110495595 LOC106574881 coding downstream 266756 4895914 ~ 5043592 (+)
LOC118941222 NA coding downstream 354802 4944941 ~ 5000801 (+)
LOC110510710 LOC106575389 coding downstream 523771 5152929 ~ 5739611 (+)
G1512024 NA non-coding upstream 12513 4615588 ~ 4616222 (+)
G1512023 NA non-coding upstream 13671 4614524 ~ 4615064 (+)
G1512004 NA non-coding upstream 26892 4574531 ~ 4601843 (+)
G1511871 NA non-coding upstream 64238 4561573 ~ 4564497 (+)
G1511855 NA non-coding upstream 112348 4514410 ~ 4516387 (+)
G1511974 LOC106592258 non-coding downstream 144986 4774144 ~ 4822072 (+)
G1512080 NA non-coding downstream 146418 4775576 ~ 4821454 (+)
G1511972 NA non-coding downstream 184254 4813412 ~ 4815949 (+)
G1512095 NA non-coding downstream 195179 4824337 ~ 4859103 (+)
G1512020 NA other upstream 10783 4610018 ~ 4617952 (+)
G1511398 NA other upstream 343791 4281416 ~ 4284944 (+)
G1510639 NA other upstream 1754569 2872394 ~ 2874290 (+)
G1510527 NA other upstream 1918988 2708713 ~ 2709747 (+)
G1510524 LOC106597055 other upstream 1923238 2704842 ~ 2705497 (+)
G1512113 NA other downstream 236837 4865995 ~ 4868008 (+)
G1512182 NA other downstream 474929 5104087 ~ 5106088 (+)
G1512205 NA other downstream 613576 5242734 ~ 5243427 (+)
G1512309 NA other downstream 978750 5607908 ~ 5613036 (+)

Expression


Co-expression Network