G1511921 (LOC106574716)


Basic Information

Item Value
gene id G1511921
gene name LOC106574716
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5169380 ~ 5439543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729900
ccccaaagagcaagcaatgcagatgtagaagcagcGGCCAGGAAAAACTCTCCAGAAAGAAGGAACCTTGGAAGAAagttagagaggaaccaggcccaaaggggtgaccagtcctcttctgtctgtaccTGGTAacatatgtattcatatcagtaggctgtaCAATACAGGGGAATTAAACTATTCTAAAAGTGGGTAAGAGATGAAAGTTAAAAAGGGGCGTGTCATCCTCTACTCACTATAACAAGGGAtagtaactacagactcatttcatataatcctccactcactatcacaagggttagtaactacacagactcatttcatatcatcctccactcactatcacaagggttagtaactacacagactcatttcatatcatcctccactcactatcacaagagttagtaactacacagactcatttcatatcatcctccactcactatcacaagggttagtaactacagactcatttcatatcatcctccactcactatcacaagggttagtaactacacagactcatttcatatcatcctccactcactatcacaagggttagtaactacagactcatttcatatcatcctccactcactatcacaagggttagtaactacacagactaatTTCATATCATcgtccactcactatcacaagggttagtaactacacagactcatttcatatcatcctccactcactatcacaagggttagtaactacacactCATTTCATAGAACTTTAAAACACTGGCAGTTTGTCTACTTCACTTCTTTAGTCTCCTCTCTGAACACTCCAGATAgaccagtgaataaaacaaatgctGACAATACTGGTGTCAAACCATGCAAGTGTCAGTAGCATGAAATAACATCTACCTTCTCATTGAAACAGTTATACTGCAACCTTTCATACACAGTGGGAAGTTGGAACGAACAACAAACTTAGTAAGATAGAACCTGCTCTTGCCATGAGAAACAGATTTCCCAATCTTCTCAGactcttcttcatctttaatgttaacattcagctccagtgttggactgcagtcttccagcttcactgatgccatctctggatcctgcagagAAAACTGGGCTCCAttgtcacaatcaggacccagtgactgtaggtttggacacagtgtggaaggagagtggcaggctgggtttgtcctcactgttgatgttaccgGAATCAGACTTAATCTGAG

Function

NR:

description
uncharacterized protein LOC110515905

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729900 True 1223 lncRNA 0.41 2 5169380 5439543

Neighbor

gene id symbol gene type direction distance location
LOC110495595 LOC106574881 coding upstream 125788 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 185245 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 278395 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 421137 4654041 ~ 4748243 (+)
LOC118941040 LOC106593609 coding upstream 544523 4618088 ~ 4624857 (+)
LOC110513970 LOC106575958 coding downstream 22359 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 86820 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 133848 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 152084 5591627 ~ 5593672 (+)
LOC110519537 LOC106592870 coding downstream 265208 5704751 ~ 5708466 (+)
LOC110510710 LOC106575389 non-coding upstream 12707 5152929 ~ 5739611 (+)
G1512171 NA non-coding upstream 84382 5084758 ~ 5084998 (+)
G1512130 NA non-coding upstream 217272 4950984 ~ 4952108 (+)
G1512261 NA non-coding downstream 14054 5453597 ~ 5454546 (+)
G1512275 NA non-coding downstream 71342 5510885 ~ 5511162 (+)
G1512276 LOC106592870 non-coding downstream 81847 5521390 ~ 5594716 (+)
G1512284 NA non-coding downstream 99605 5539148 ~ 5544866 (+)
G1512182 NA other upstream 63292 5104087 ~ 5106088 (+)
G1512113 NA other upstream 301372 4865995 ~ 4868008 (+)
G1512020 NA other upstream 551428 4610018 ~ 4617952 (+)
G1511398 NA other upstream 884436 4281416 ~ 4284944 (+)
G1512309 NA other downstream 168365 5607908 ~ 5613036 (+)
LOC110518779 dis3 other downstream 738297 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 959220 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 1001309 6404433 ~ 6459931 (+)

Expression


Co-expression Network