G1511882


Basic Information

Item Value
gene id G1511882
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5281445 ~ 5324126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729858
CATGCATCAAGTATTACGTATACAGACAATTCAGGATTGTCTGTATATTCAGTCCCAGTTTTCTCAACGATCACAGCATGCAACACCCTGTATATTTGGTTTTGAGTTACAGACTTGTGTCGCTGAACTTTGAAAACACACATGTCAGATATATAAGCATATAAACAACAAATATGATACACGTTACAATTAAATGGTGTTTCAAACAAGTAAAATCTTAGACAAAGTTGTTTCTAGTTCTTCAGAATCATCCACAACATGATTCATGATTTGTTCCATTTTCAGCACACGCTCTACATTAACCCAGGCATTGTGTGTTGTGTAGAACGATACATCGTTCACTTTATTTTCAATAATCTGATGCATAACATTTGTAAGTTCTCTCAAAATAAGACATTTATTTATTATCTCTAACATCGTATACACATAGTTGCCCATTGCATTACATCTAAATAACAACATGTCACTCGGTCTCTTGGGGTTTATTGAGCCAGAAAGTCATCACATCAGCCACCACAACTTCCCGGTATTTATTGTCGTCCAACAGGGTGTGTCGGATTTCTTTGAGTTTATCGTGGATGTAGATTGCCTCCTTCAGTTCATGTAGGAATGCCGTGGTTACCAAGTAAACTCTGGGGATAGACGGCACAAGACCCATAGACTCCAGGGCTCTGACCAGCGATGGTATAAACCTGCAGGACCACAGTCTTTTCACCAGCTCCTCAAATTGGTTGAAGAAGTAGTATCTTGGCGGGTCATATACGGCGCTTGCTGGGGTGATTGATCTCACAACCGATGCATTTCTCTTATATATTCTCCAATCACCACGTCTAGAAGTGTGGCTACAGAGGCCTTGATGGTGTCCACAAAAATAGTACTGACTACCCCATCAAACACGTCCTCAGGCTGTGTACATGTAGGGGGTGTCGTGGGTCTCGCCAGGGGGGAGTAGAAAGCCGGGCTGCGAGGCATAGAGTCCTTAGGGTCTGGCCCCCATGTCGTATCGGAGTCCTGGTATGTTGTATGAATATCCATGGTGTATGATGAAATGAAGAACTGGAGGCTTTAAGGGCACTCCTTTTATTGTTGAACCAGTCCTTTGGGTATCAGGGCGTGGTTAACGCAACCGCGTACTTAGTTTTCTTCAGAGGCTGTCCCTTCTGAGGATGTACCTTCTTGGGGCTCCTTTGAATCATAATCCTCAGGATTCGTATATATTATGCACTTCTTTACATGAACAATGCTCTGCCGCTGTTGGCTCTGTACAAAGAGAGCGTCCAACAGCTGGAACATTTTCAATTCCATTAGATCCCAAATTTGAAAAGGAATAAGCATGAGCAACCTAAAATCCCCTCCATCAcaaatgttttggttgcgggtttCCTCGTTGCCGAAATAGAACACGTAGCCACATGGAAGTCCattctttctttgtattttcacCCTGTGAATTAGTCAGGGGCACCTTGAACAAGCTATACCCCCTTGGTGATAAGGCTCAGTTCGGGACACACAACCTTGCGAAAAACCGTCCAGTCTTCAAGCCCGTAGTCCACTCCAGTCTGGTCTGTATATTCTTCTCCTTCGGCTACCGTATAGAGGTTCACTCTACAGGCCAGGTAATCAAACCGATACCCCGATTGATGTCCATTAGACATCAGCACTTGATCTTTCAGCGTAGTTGCGGGCGGTATTTGGGTTCTATACACACTTAGAAACCGCTTTTTTTGGCGCATCGTATATTGTGGCTTGATTCTTGGCCCTTTCTCGATGTTTCAACCGAGGTCCTGCTTCCGTTGTTACAGTCATCACAGCTTTGCCACTGATCACAAAATCCATGCTGATTTAAAAAAtcttgtttagtgttctgaggACGCATGTCTTGTTCTGGGCTTTATTTATAAGGCGTCTGCCAACCCCAATACCCCAGGACATTCGTGTTTcatagacaacaaccctaaggTCAATAAAACAGGAGGTGGGGGGGTCAAACTCTTTGAAATGGTCATCCCCCCAGTTCAAAGAGGCCACTAGACAGCAATCatcatgacaacttcaaaggCATTATATACATATTGTCGCACTCACTCCAAGGCGTGAGAACAGGAACAGGATGAACATATATGGGCATAACCACGCAATCACTTCCCGCCAGGATGTCCTTACCGGATGCCCAAATATGGGCATGCACATGTCATCCGGACATAGGGTCATAAATCAAACGTTTGACGTGtgccgtctactttattctctctcaCACCAAAACTGACAAGGTGCACACTGATCAGTAAAGAGAGACTAACATTATATAATGCTCCCTTTCCTCTTCATTGTTCTCTCACAGTGAGAAACTATAGGATTACAATAGTGTTCTACACTTTCTTCATTTGATCAAATTCAACGTTGCCAATTATTTAATGACATGAGAATTAAGTGGAGTGTCTAATCTTAGCTGGTCTGAGAGAACTGATGAGGCCTGTCCTTTATGTATACATTTGTGTCTTTTTAAATGACCCAATCTGTAgaacctcttcccacagtcagtgcagtgataaggcttctctGAAGTGTGTATCCGTTGGTGTGTTTTTACATTGCCCAATTGGGAAAAACTCTTGCCACATTGAGAGCGgaaataaggcttctctcctttgTCTTTTCTCGAATGACCTTAAAGCTCAGCTGGTGTTTTAACATTTCCTACAGTCAGATCAGTGGTAAGGCTCCTCTCGTGTTTCCTTTGGTGTCTTTTTAAATGGCACATTCAAAAGAAACACTTTCCACAGTcggagcaggagtaaggcttctctccagtgtgtgtatgttcagGTCATTTTAAGGTGTCCGGACGAGAGAAACTTGCCCCACAGTCAGAaaaggagtaaggcttctcttaCTCCTGAGAGAAACTCTTTTCaaagtcagagcaggagtaaggcttctctacTTTGTGTATACGTTCATGTTGTTTTAAGGTGCCCAGGtgagagaaactctttccacagccagagcaggagtaaggcttctctcctgtgtgtatacgttcatgttGTTTGAAGTTGCACAGTagagagaaactctttccacagtcagagcaggagtaaggcttctctcctgtgtgtatacgttcatgttGTTTGAAGTTGCCCAGTagagagaaactctttccacagtcagagcaggagtaaggcttctctcctgtgtgtgttctctggtgaacttttaggtcagttgatgttttgaagcattttacacagtcagagcaggagtaaggcttctctcctgtgtgtatacgttcatgttGTTTGAAGGTACCCAgttgagagaaactctttccacagtcagagcaggagtaaggcttctctcctgtgtgtgttctctggtgaacttttaggtcagttgatgttttgaagcattttacacagtcagagcagaagtaaggcttctctcctgtgtgtatacaaTCATGTTGTTTTAAGGTGTCCGGACGAGAGAAACTCGCCCCACAGTCatagcaggagtaaggcttctctcccgtgtgtatacgttcatgtcGTTTTAAGGTACTCAGTTGAGAGAAACTCGCCCCAcattcagagcaggagtaaggcttctctcctgtgtgtatacgttcatgtcGTTTTAAGGTACCCAGTTCAGAGAAACTCGCCCCACATTCAgtgcaggagtaaggcttctttcttgtgtgtatacgttcatgtcctgtgtgtatacgttcatgtcGTTTTAAGGTGTACCAATTTGAGAAACTCGTCCCAcattcagagcaggagtaaggcttctctcctgtgtgtgttctctgatgaacttttagcgCAGTTGACGTTTTGAAGCATTTTCCAcattcagagcaggagtaaggcttctctcctgtgtgtgttctctgatgaacttttagttTAGTTGATGTTTTCAAGCATTTTCCACATTCAGAGCAGGAGTAaagcttttctcctgtgtgtatttttagGTGTATTTTTAGCTTAGATAGAAATGGGAAAATCTCCTCACAATGTGTGCAGTGGTGAGACCTCTTTGCTATGTGATCTTCCTGCTGATGCTCTCTGGATATAGAGAATGTCTCAAC

Function

NR:

description
PREDICTED: oocyte zinc finger protein XlCOF6-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729858 True 4108 lncRNA 0.43 3 5281445 5324126

Neighbor

gene id symbol gene type direction distance location
LOC118941027 NA coding upstream 6245 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 237853 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 297310 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 390460 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 533202 4654041 ~ 4748243 (+)
LOC110513970 LOC106575958 coding downstream 137776 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 202237 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 249265 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 267501 5591627 ~ 5593672 (+)
LOC110519537 LOC106592870 coding downstream 380625 5704751 ~ 5708466 (+)
G1511952 NA non-coding upstream 25654 5255402 ~ 5255791 (+)
G1512167 NA non-coding upstream 104936 5075737 ~ 5176509 (+)
G1512168 NA non-coding upstream 109093 5080648 ~ 5172352 (+)
LOC110510710 LOC106575389 non-coding upstream 124772 5152929 ~ 5739611 (+)
G1512171 NA non-coding upstream 196447 5084758 ~ 5084998 (+)
G1511978 LOC106592258 non-coding downstream 647 5324773 ~ 5329556 (+)
G1511982 NA non-coding downstream 25507 5349633 ~ 5747483 (+)
G1512243 NA non-coding downstream 91552 5415678 ~ 5416176 (+)
G1512245 NA non-coding downstream 103236 5427362 ~ 5428372 (+)
G1512261 NA non-coding downstream 129471 5453597 ~ 5454546 (+)
G1512205 NA other upstream 38018 5242734 ~ 5243427 (+)
G1512182 NA other upstream 175357 5104087 ~ 5106088 (+)
G1512113 NA other upstream 413437 4865995 ~ 4868008 (+)
G1512020 NA other upstream 663493 4610018 ~ 4617952 (+)
G1512309 NA other downstream 283782 5607908 ~ 5613036 (+)
LOC110518779 dis3 other downstream 853714 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 1074637 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 1116726 6404433 ~ 6459931 (+)

Expression


Co-expression Network