G1512560 (LOC106574716)


Basic Information

Item Value
gene id G1512560
gene name LOC106574716
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5281447 ~ 5321420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1730649
GTTCTATTTCGGCAACGAGGaaacccgcaaccaaaacatttgTGATGGAGGGGATTTTAGGTTGCTCATGCTTATTCCTTTTCAAATTTGGGATCTAATGGAATTGAAAATGTTCCAGCTGTTGGACGCTCTCTTTGTACAGAGCCAACAGCGGCAGAGCATTGTTCATGTAAAGAAGTGCATAATATATACGAATCCTGAGGATTATGATTCAAAGGAGCCCCAAGAAGGTACATCCTCAGAAGGGACAGCCTCCGAAGAAAACTAAGTACGCGGTTGCGTTAACCACGCCCTGATACCCAAAGGACTGGTTCAACAATAAAAGGAGTGCCCTTAAAGCCTCCAGTTCTTCATTTCATCATACACCATGGATATTCATACAACATACCAGGACTCCGATACGACATGGGGGCTAGACTCTAAGGACTCTATGCCTCGCAGCCCGGCTTTCTACTCCTCCCTGGCGAGACCCACGACACCCCCTACATGTACACAGCCTGAGGACGTGTTTGATGGGGTAGTCAGTACTATTTTTGTGGACACCATCAAGTCCTCTGTAGCCACACTTCTAGACGTGGTGATTGGAGAATATATAAGAGAAATGCATCGGTTGTGAGATCAATCACCCCAGCAAGCGCCGTATATGACCCGCCAAGATACTACTTCTTCAACCAATTTGAGGAGCTGGTGAAAAGACTGTGGTCCTGCAGGTTTATACCATCGCTGGTCAGAGCCCTGGAGTCTATGGGTCTTGTGCCGTCTATCCCCAGAGTTTACTTGGTAACCACGGCATTCCTACATGAACTGAAGGAGGCAATCTACATCCACGATAAACTCAAAGAAATCCGACACACCCTGTTGGACGACAATAAATACCGGGAAGTTGTGGTGGCTGATGTGATGACTTTCTGGCTCAATAAACCCCAAGAGACCGAGTGACATGTTGTTATTTAGATGTAATGCAATGGGCAACTATGTGTATACGATGTTAGAGATAATAAATAAATGTCTTATTTTGAGAGAACTTACAAATGTTATGCATCAGATTATTGAAAATAAAGTGAACGATGTATCGTTCTACACAACACACAATGCCTGGGTTAATGTAGAGCGTGTGCTGAAAATGGAACAAATCATGAATCATGTTGTGGATGATTCTGAAGAACTAGAAACAACTTTGTCTAAGATTTTACTTGTTTGAAACACCATTTAATTGTAACGTGTATCATATTTGTTGTTTATATGCTTATATATCTGACATGTGTGTTTTCAAAGTTCAGCGACACAAGTCTGTAACTCAAAACCAAATATACAGGGTGTTGCATGCTGTGATCGTTGAGAAAACTGGGACTGAATATACAGACAATCCTGAATTGTCTGTATACGTAATACTTGATGCA
>TU1730648
GTTCTATTTCGGCAACGAGGaaacccgcaaccaaaacatttgTGATGGAGGGGATTTTAGGTTGCTCATGCTTATTCCTTTTCAAATTTGGGATCTAATGGAATTGAAAATGTTCCAGCTGTTGGACGCTCTCTTTGTACAGAGCCAACAGCGGCAGAGCATTGTTCATGTAAAGAAGTGCATAATATATACGAATCCTGAGGATTATGATTCAAAGGAGCCCCAAGAAGGTACATCCTCAGAAGGGACAGCCTCTGAAGAAAACTAAGTACGCGGTTGCGTTAACCACGCCCTGATACCCAAAGGACTGGTTCAACAATAAAAGGAGTGCCCTTAAAGCCTCCAGTTCTTCATTTCATCATACACCATGGATATTCATACAACATACCAGGACTCCGATACGACATGGGGGCCAGACCCTAAGGACTCTATGCCTCGCAGCCCGGCTTTCTACTCCCCCCTGGCGAGACCCACGACACCCCCTACATGTACACAGCCTGAGGACGTGTTTGATGGGGTAGTCAGTACTATTTTTGTGGACACCATCAAGGCCTCTGTAGCCACACTTCTAGACGTGGTGATTGGAGAATATATCAGAGAGAAATGCATCGGTTGTGAGATCAATCACCCCAGCAAGCGCCGTATATGACCCGCCAAGATACTACTTCTTCAACCAATTTGAGGAGCTGGTGAAAAGACTGTGGTCCTGCAGGTTTATACCATCGCTGGTCAGAGCCCTGGAGTCTATGGGTCTTGTGCCGTCTATCCCCAGAGTTTACTTGGTAACCACGGCATTCCTACACGAACTGAAGGAGGCCATCTACATCCACGATAAACTCAAAGAAATCCGACACACCCTGTTGGACGACAATAAATACCGGGAAGTTGTGGTGGCTGATGTGATGACTTTCTGGCTCAATAAACCCCAAGAGACCGAGTGACATGTTGTTATTTAGATGTAATGCAATGGGCAACTATGTGTATACGATGTTAGAGATAATAAATAAATGTCTTATTTTGAGAGAACTTACAAATGTTATGCATCAGATTATTGAAAATAAAGTGAACGATGTATCGTTCTACACAACACACAATGCCTGGGTTAATGTAGAGCGTGTGCTGAAAATGGAACAAATCATGAATCATGTTGTGGATGATTCTGAAGAACTAGAAACAACTTTGTCTAAGATTTTACTTGTTTGAAACACCATTTAATTGTAACGTGTATCATATTTGTTGTTTATATGCTTATATATCTGACATGTGTGTTTTCAAAGTTCAGCGACACAAGTCTGTAACTCAAAACCAAATATACAGGGTGTTGCATGCTGTGATCGTTGAGAAAACTGGGACTGAATATACAGACAATCCTGAATTGTCTGTATACGTAATACTTGATGCAT
>TU1730651
GTTCTATTTCGGCAACGAGGaaacccgcaaccaaaacatttgTGATGGAGGGGATTTTAGGTTGCTCATGCTTATTCCTTTTCAAATTTGGGATCTAATGGAATTGAAAATGTTCCAGCTGTTGGACGCTCTCTTTGTACAGAGCCAACAGCGGCAGAGCATTGTTCATGTAAAGAAGTGCATAATATATACGAATCCTGAGGATTATGATTCAAAGGAGCCCCAAGAAGATACATCCTCAGAAGGGACAGCCTCCGAAGAAAACTAATTACGCGGTTGCGTTAACCACGCCCTGATACCCAAAGGACTGGTTCAACAATAAAAGGAGTGCCCTTAAAGCCTCCAGTTCTTCATTTCATCATACACCATGGATATTCATACAACATACCAGGACTCCGATACGACATGGGGGCCAGACCCTAAGGACTCTATGCCTCGCAGCCCGGCTTTCTACTCCCCCCTGGCGAGACCCACGACACCCCCTACATGTACACAGCCTGAGGACGTGTTTGATGGGGTAGTCAGTACTATTTTTGTGGACACCATCAAGGCCTCTGTAGCCACACTTCTAGACGTGGTGATTGGAGAATATATCAGAGAGAAATGCATCGGTTGTGAGATCAATCACCCCAGCAAGCGCCGTATATGACCCGCCAAGATACTACTTCTTCAACCAATTTGAGGAGCTGGTGAAAAGACTGTGGTCCTGCAGGTTTATACCATCGCTGGTCAGAGCCCTGGAGTCTATGGGTCTTGTGCCGTCTATCCCCAGAGTTTACTTGGTAACCACGGCATTCCTACACGAACTGAAGGAGGCCATCTACATCCACGATAAACTCAAAGAAATCCGACACACCCTGTTGGACGACAATAAATACCGGGAAGTTGTGGTGGCTGATGTGATGACTTTCTGGCTCAATAAACCCCAAGAGACCGAGTGACATGTTGTTATTTAGATGTAATGCAATGGGCAACTATGTGTATACGATGTTAGAGATAATAAATAAATGTCTTATTTTGAGAGAACTTACAAATGTTATGCATCAGATTATTGAAAATAAAGTGAACGATGTATCGTTCTACACAACACACAATGCCTGGGTTAATGTAGAGCGTGTGCTGAAAATGGAACAAATCATGAATCATGTTGTGGATGATTCTGAAGAACTAGAAACAACTTTGTCTAAGATTTTACTTGTTTGAAACACCATTTAATTGTAACGTGTATCATATTTGTTGTTTATATGCTTATATATCTGACATGTGTGTTTTCAAAGTTCAGCGACACAAGTCTGTAACTCAAAACCAAATATACAGGGTGTTGCATGCTGTGATCGTTGAGAAAACTGGGACTGAATATACAGACAATCCTGAATTGTCTGTATACGTAATACTTGATGCAT
>TU1730652
ATTCTTCACAACAAAGGACACGCCAGAATTGTGCAGTCGAGACCACAACTTCTGTGTACGTTTCAAATGTATTACTACTGGCTCCGGTATTTCCACGAcactctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacagtGGAACTGAATgccaacattaaagatgaagaagtGGAGGAGAAGATTGGGACATCTGTTTCTCATGGTAAGAGCAGGTTCTATCTAACTAAGTTTGTTGTTCATTCCAACTTCCCACTGTGTATGAAAAGTTGCAGTAGAACTGTTTCATGATGAACTGTTTCAATGAGAAGGTAGATGTTATTTCATGCTACTGACTAGGGATAcacaatatatcggtgaacatatcaggtgtctagtttaacgctgatgtgcaaaaccgatgtcaaagctgacgtaaATACCTACCAATATAACGTAGGTACAGGACGTAATGAACTCGCGTAAACTTTTGCGACACAGCATTCCCATCCTAGCCCACCATGTCTGCTGTGTGTTGACTTCAAAttctggggtgtgaactacgtttctatgTAAGCGTTGATAGACATGGTAATGGCTtcatagtattggagaaaagctgaaaaaaactgaccctccgttacatcgtgacgtgtcatgCTGTAACGAACAGcatgcataaagcaactatttatgtcttacaatctctctccaccaggtgtagcacttctctcatcgttttaaaaacaagaaatggacagtgacgggggtaaggagaggatacctagtcattttttgcgtcatcattgcatgcgatcagcATTCTCAAAGgtgctgtttacttctaagatcactttagcactgcCCTAAAAACCctattcaaattcgacacaaaccttcaaataggaaTCTAATAAAACATTTATATAAACTCTTATTCGTGTTTTATtgacattttagaggcgataagttggacagatcgagtgggGAAAAAAGCTATTTTCCCACACAACACCTCTCCTtttcactatcacgcattagtttagCTTCCCAACCTGCCATTTAAAAAAAGACCCCAcagggctcattgcctgcttgaattatgcagaaacgggcagcgtttacGTCATGTAATTGATcatgttggaaaggggagaaattgtgctttacaatggtattgacattacagttgatctgaaAGTATTACgcttttggggcgctaaaataagggtaattgtacggaccaaggcgatgtacgagtttacgtgagtttacgttagcaccaatacaaccagcctgaaaacaatagctaggttgccacttgttgttcgcctattgaaattgaatttcagttcatgaaaataaacagttagccagctacttaaccctgttgcccaaagcttcCGTTATAAGCAGCCaactagcttcatctggctagtgaagCTAGCCACCATAAGGATTGGCACAAAAGTGGAATTTGCTGTTTTCAAAATGAAGGTATGTCATTGATAGTGATGCAAATGattacaaatagtagaatt
>TU1730655
ATTCTTCACAACAAAGGACACGCCAGAATTGTGCAGTCGAGACCACAACTTCTGTGTACGTTTCAAATGTATTACTACTGGTATGTAATAGCACGTTTTAATATCTTAAGAACATGTCATAACATGCTAGGTAACAAATACGTCAAGTTATTATCACGTTtggtagaagaaaaaaaatgtgccAAACCGCGTGAGTGAACGTGATcactttttaaattatttttttttttacaattgacATAGATACTCTGGGTTTATCTGAGTGGATGTATCTCGTCAAGGTAATCTCATTAAGGATCAAATAATTTGAGATTTCTGAGTTCGTTTAACATGTCGTTTTTGGTTTTGTGTAACGTTAAAATTCACGAGCTGGTAAAATGGCGGCTCCCTCTCGGTCTGCATCAACGGACTTCAGTGCAGGCAGTGAGGGTGCAGCAGAGAGACACCATTTTACGGTTGCACTACTGTTTTGGAGATAAATGTAATGATCATCAGTTTTCTACACGTGTACTAATATTGAGACATTCAgttgtttctgtctgtctataAATGTTACTATGGTGTGAACGGAAATAATATTGTTTTTTGATTGGAATAATACAGGGAAGACCAGGTTATTCAGGAAAATAGTACATAGTGCTGCCTGAAACATACTGCAACCTTGTACTAAATGGTTTTTGAGTCATTTATGTCAATTCAGAGATCTACTATAGATTAAGTTCTGTAGCCTAATATAAAGTGTATACTTTGTCTAATGTGAATGAACTCGTGTTTTGTTGTCAATGCTTAGCTACCAGATCTGTTGAAATGAGATCAGTGCTTGAATTGGACAGGAGCTCACTGGAGCTGAGTACCAGCACCTCAAATGTCTACTGCTTGAGCTCATGTTCCTCTTATAGAGAATAAAGTGCCATAACTGTCAAGAGTAACTTTTGTATCCGTTCCTATTTATTACTACTGGCCGACTCAGATTAAGCCTGAGGCTggtaacatcaacagtgaggacaaacccagccTGCCTCTTATTGGGAATTTTCCAGTAAATGTGTGCACATTATACATCTTAGAGTAGTCAGCAGAATAAGTGCACTCTATGTGTGTCTAGGTCATTAGGCACCATTAAACATGCACCTGTCTTGAGAGTGGGTGTGTCTGTTTATTGCTGTACCATTGCTATGGCTTCATGTTTACTGTTGCTATGGTTATGCCAGGAATGGAATCTATGCCCAACATGCACCTGTCTTGGGAGTGTGCATATCTGTCTATTTTTGTACCATTGCTATGAATGGAATCTATGCCCTAATGTGAAACCAAGCTAAAGTTAGTGCAAGGCAAAAAGATAATGGTGGCTAAATGGCCGAGGGGATGAACCATTAACATAAAGAGGAGTTACGTAAAGGAGGAAAACTATAACAAGTGTATGCCAAGGCTGGAAAGACACTTGCTTCATGAACCAGCTCGGGTTCTAttactttgtaataaagtctttttGAACTCACAGGCTCCGGTATTTCCACGAcactctccttccacactgagtccaaacctacagtcactgggtcctgattgtgacagtggagcccagtttgctctgcaggatccagagatggcatcagtgaagctggaagactgcagtcaaacagtGGAACTGAATgccaacattaaagatgaagaagtGGAGGAGAAGATTGGGACATCTGTTTCTCATGgtgtagcacttctctcatcgttttaaaaacaagaaatggacagtgacgggggtaaggagaggatacctagtcattttttgcgtcatcattgcatgcgatcagcATTCTCAAAGgtgctgtttacttctaagatcactttagcactgcCCTAAAAACCctattcaaattcgacacaaaccttcaaataggaaTCTAATAAAACATTTATATAAACTCTTATTCGTGTTTTATtgacattttagaggcgataagttggacagatcgagtgggGAAAAAAGCTATTTTCCCACACAACACCTCTCCTtttcactatcacgcattagtttagCTTCCCAACCTGCCATTTAAAAAAAGACCCCAcagggctcattgcctgcttgaattatgcagaaacgggcagcgtttacGTCATGTAATTGATcatgttggaaaggggagaaattgtgctttacaatggtattgacattacagttgatctgaaAGTATTACgcttttggggcgctaaaataagggtaattgtacggaccaaggcgatgtacgagtttacgtgagtttacgttagcaccaatacaaccagcctgaaaacaatagctaggttgccacttgttgttcgcctattgaaattgaatttcagttcatgaaaataaacagttagccagctacttaaccctgttgcccaaagcttcCGTTATAAGCAGCCaactagcttcatctggctagtgaagCTAGCCACCATAAGGATTGGCACAAAAGTGGAATTTGCTGTTTTCAAAATGAAGGTATGTCATTGATAGTGATGCAAATGattacaaatagtagaatt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1730649 False 1400 lncRNA 0.42 2 5281447 5321420
TU1730648 False 1403 lncRNA 0.43 2 5299505 5321420
TU1730651 False 1403 lncRNA 0.43 2 5299505 5321420
TU1730652 False 1603 lncRNA 0.41 2 5309561 5312584
TU1730655 True 2532 TUCP 0.40 2 5309561 5312584

Neighbor

gene id symbol gene type direction distance location
LOC118941224 NA coding downstream 14135 5267148 ~ 5267312 (-)
LOC110511156 LOC106575856 coding downstream 56162 5217838 ~ 5225285 (-)
LOC110514545 LOC106574716 coding downstream 92986 5068836 ~ 5188461 (-)
LOC110528886 LOC106592258 coding downstream 184109 4956450 ~ 5097338 (-)
LOC110528776 NA coding downstream 425910 4834342 ~ 4855537 (-)
LOC118941023 LOC106575981 coding upstream 55168 5376588 ~ 5388693 (-)
LOC118941221 NA coding upstream 128536 5408991 ~ 5718855 (-)
LOC118941223 NA coding upstream 145693 5467113 ~ 5467302 (-)
LOC110495597 NA coding upstream 155527 5476947 ~ 5490742 (-)
LOC118941028 NA coding upstream 265133 5586553 ~ 5589573 (-)
G1512888 NA non-coding downstream 15882 5264490 ~ 5265565 (-)
G1512610 LOC106592258 non-coding downstream 31819 5245875 ~ 5249628 (-)
G1512854 NA non-coding downstream 33611 5246909 ~ 5247836 (-)
G1512855 NA non-coding downstream 107968 5080940 ~ 5173479 (-)
G1512661 NA non-coding upstream 51450 5372870 ~ 5373663 (-)
LOC110517120 LOC106576008 non-coding upstream 53743 5229992 ~ 5652429 (-)
G1512628 NA non-coding upstream 126638 5448058 ~ 5466020 (-)
G1512914 NA non-coding upstream 135767 5457187 ~ 5459138 (-)
LOC110515909 LOC106592258 non-coding upstream 171630 5493050 ~ 5870220 (-)
G1512635 NA other downstream 439653 4835070 ~ 4841794 (-)
G1510865 NA other downstream 2075524 3205375 ~ 3205923 (-)
G1510645 NA other downstream 2402070 2878653 ~ 2879377 (-)
LOC110517047 LOC106574932 other downstream 2941891 1803391 ~ 2339987 (-)
LOC110495376 pcdh17 other downstream 4116025 1004783 ~ 1165747 (-)
LOC110495369 lims1 other upstream 587979 5898100 ~ 5913381 (-)
LOC118941020 LOC106595074 other upstream 637371 5956579 ~ 5961996 (-)
G1512558 NA other upstream 663859 5985279 ~ 5987523 (-)
LOC110517117 NA coding downstream 14885 5281413 ~ 5294676 (-)

Expression


Co-expression Network