G1511895 (LOC106574716)


Basic Information

Item Value
gene id G1511895
gene name LOC106574716
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5308671 ~ 5312593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729874
gaggctgtaacgtaacaaaacgtgggaaaagtcaaggggtctaaatactttctgaatgggagaggggatacctagtcagttgtacaactgaatgatttcaactaaaatgtgtcttccacatttaacccaacccctctgaatcaaagaggtggaggggggggctgccataatcgacattcACGTCTTCGGTGCCCCgggaacagtggcttaactgccttgctcaggggcagaataacatttttaccttgtcagctcggggattcaatccagcaacctttcctccactcactatcacaagggttagtaacgacacagactcatttcatagaaCTTTAAAACACTGGCAGTTTGTCCACTTCACTTCTTTAGTCTCCTCTCTGAACACTCCAGACAGCCCAGTTAATAAAACAAATGCTGGCAATACTGGTGTCAAACCATGCAAGTGTCAGtagtagtgatgcaccgatatgacattttttgcCCATTCCGATATTttccttgacaaaaaaaacagCTACCGATACCCGATATTGACATTTTTTGCGGCCTTTTATGCAttttagtacagttaaatagttaacacacacacaaacacacacatggacgcagcagtctaaggcacagcatctcagtgcaagaggcgtcactacagtccccggTTCAAAtcctggctgtatcacatccggccatgattgggcggcgcacaactggcccatcgtcgtccgggtttggccggggtaggccatcattgtaaataagaatttgttagttagttaaataaaaggttacacaaacacaccaaaaagttattttgttggcatttccataattctactatttgtaatCATTTGCATCACTATCAATGACATACCTTCATTTTGAAAACAGCAAATTCCACTTTTGTGCCAATCCTTATGGTGGCTAGcttcactagccagatgaagctagttGGCTGCTTATAACGgaagctttgggcaacagggttaagtagctggctaactgtttattttcatgaactgaaattcaatttcaataggcgaacaacaagtggcaacctagctattgttttcaggctggttgtattggtgctaacgtaaactcacgtaaactcgtacatcgccttggtccgtacaattacccttattttagcgccccaaaagcGTAATACTttcagatcaactgtaatgtcaataccattgtaaagcacaatttctcccctttccaacatgATCAATTACATGACgtaaacgctgcccgtttctgcataattcaagcaggcaatgagccctgTGGGGTCTTTTTTTAAATGGCAGGTTGGGAAGctaaactaatgcgtgatagtgaaaAGGAGAGGTGTTGTGTGGGAAAATAGCTTTTTTCcccactcgatctgtccaacttatcgcctctaaaatgtcaATAAAACACGAATAAGAGTTTATATAAATGTTTTATTAGAttcctatttgaaggtttgtgtcgaatttgaatagGGTTTTTAGGgcagtgctaaagtgatcttagaagtaaacagcacCTTTGAGAATgctgatcgcatgcaatgatgacgcaaaaaatgactaggtatcctctccttacccccgtcactgtccatttcttgtttttaaaacgatgagagaagtgctacacctggtggagagagattgtaagacataaatagttgctttatgcatgCTGTTCGTTACAGcatgacacgtcacgatgtaacggagggtcagtttttttcagcttttctccaatactatgaAGCCATTACCATGTCTATCAACGCTTAcatagaaacgtagttcacaccccagaaTTTGAAGTCAACACACAGCAGACATGGTGGGCTAGGATGGGAATGCTGTGTCGCAAAAGTTTACGCGAGTTCATTACGTCCTGTACCTACGTTATATTGGTAGGTATttacgtcagctttgacatcggttttgcacatcagcgttaaactagacacctgatatgttcaccgatatattgtgTATCCCTAGTCAGTAGCATGAAATAACATCTACCTTCTCATTGAAACAGTTCATCATGAAACAGTTCTACTGCAACTTTTCATACACAGTGGGAAGTTGGAATGAACAACAAACTTAGTTAGATAGAACCTGCTCTTACCATGAGAAACAGATGTCCCAATCTTCTCCTCCacttcttcatctttaatgttggcATTCAGTTCCactgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagagcaaactgggctccactgtcacaatcaggacccagtgactgtaggtttggactcagtgtggaaggagagtgTCGTGGAAATACCGGAGCCTGTGAGTTCaaaaagactttattacaaagtaaTAGAACCCGAGCTGGTTCATGAAGCAAGTGTCTTTCCAGCCTTGGCATACACTTGTTATAGTTTTCCTCCTTTACGTAACTCCTCTTTATGTTAATGGTTCATCCCCTCGGCCATTTAGCCACCATTATCTTTTTGCCTTGCACTAACTTTAGCTTGGTTTCACATTAGGGCATAGATTCCATTCATAGCAATGGTACAAAAATAGACAGATATGCACACTCCCAAGACAGGTGCATGTTGGGCATAGATTCCATTCCTGGCATAACCATAGCAACAGTAAACATGAAGCCATAGCAATGGTACAGCAATAAACAGACACACCCACTCTCAAGACAGGTGCATGTTTAATGGTGCCTAATGACCTAGACACACATAGAGTGCACTTATTCTGCTGACTACTCTAAGATGTATAATGTGCACACATTTACTGGAAAATTCCCAATAAGAGGCAggctgggtttgtcctcactgttgatgttaccAGCCTCAGGCTTAATCTGAGTCGGCCAGTAGTAATAAATAGGAACGGATACAAAAGTTACTCTTGACAGTTATGGCACTTTATTCTCTATAAGAGGAACATGAGCTCAAGCAGTAGACATTTGAGGTGCTGGTACTCAGCTCCAGTGAGCTCCTGTCCAATTCAAGCACTGATCTCATTTCAACAGATCTGGTAGCTAAGCATTGACAACAAAACACGAGTTCATTCACATTAGACAAAGTATACACTTTATATTAGGCTACAGAACTTAATCTATAGTAGATCTCTGAATTGACATAAATGACTCAAAAACCATTTAGTACAAGGTTGCAGTATGTTTCAGGCAGCACTATGTACTATTTTCCTGAATAACCTGGTCTTCCCTGTATTATTCCAATCAAAAAACAATATTATTTCCGTTCACACCATAGTAACATTtatagacagacagaaacaacTGAATGTCTCAATATTAGTACACGTGTAGAAAACTGATGATCATTACATTTATCTCCAAAACAGTAGTGCAACCGTAAAATGGTGTCTCTCTGCTGCACCCTCACTGCCTGCACTGAAGTCCGTTGATGCAGACCGAGAGGGAGCCGCCATTTTACCAGCTCGTGAATTTTAACGTTACACAAAACCAAAAACGACATGTTAAACGAACTCAGAAATCTCAAATTATTTGATCCTTAATGAGATTACCTTGACGAGATACATCCACTCAGATAAACCCAGAGTATCTATgtcaattgtaaaaaaaaaaataatttaaaaagtgATCACGTTCACTCACGCGGTTTggcacattttttttcttctaccaAACGTGATAATAACTTGACGTATTTGTTACCTAGCATGTTATGACATGTTCTTAAGATATTAAAACGTGCTATTACATACCAGTAGTAATACATTTGAAACGTACACAGAAGTTGTGGTCTCGACTGCACAATTCTGGCGTGTCCTTTGTTGTGAAGAATGATGTGCGC

Function

NR:

description
uncharacterized protein LOC110515905

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729874 True 3860 lncRNA 0.41 2 5308671 5312593

Neighbor

gene id symbol gene type direction distance location
LOC118941027 NA coding upstream 33471 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 265079 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 324536 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 417686 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 560428 4654041 ~ 4748243 (+)
LOC110513970 LOC106575958 coding downstream 149309 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 213770 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 260798 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 279034 5591627 ~ 5593672 (+)
LOC110519537 LOC106592870 coding downstream 392158 5704751 ~ 5708466 (+)
G1511952 NA non-coding upstream 52880 5255402 ~ 5255791 (+)
G1512167 NA non-coding upstream 132162 5075737 ~ 5176509 (+)
G1511978 LOC106592258 non-coding downstream 12180 5324773 ~ 5329556 (+)
G1511982 NA non-coding downstream 37040 5349633 ~ 5747483 (+)
G1512243 NA non-coding downstream 103085 5415678 ~ 5416176 (+)
G1512245 NA non-coding downstream 114769 5427362 ~ 5428372 (+)
G1512261 NA non-coding downstream 141004 5453597 ~ 5454546 (+)
G1512205 NA other upstream 65244 5242734 ~ 5243427 (+)
G1512182 NA other upstream 202583 5104087 ~ 5106088 (+)
G1512113 NA other upstream 440663 4865995 ~ 4868008 (+)
G1512020 NA other upstream 690719 4610018 ~ 4617952 (+)
G1512309 NA other downstream 295315 5607908 ~ 5613036 (+)
LOC110518779 dis3 other downstream 865247 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 1086170 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 1128259 6404433 ~ 6459931 (+)

Expression


Co-expression Network