G1511978 (LOC106592258)


Basic Information

Item Value
gene id G1511978
gene name LOC106592258
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5324773 ~ 5329556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729957
TAACAGATTTcccaatcttctcctcctcttcttcatctttaatgttgacattcagctccagtgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagtgcaaactgggctccactgtcacaatcaggacccagtgactgtggggttggactcagtgtggaaggagagaggcaggctgggtttgTCATTACTGTTGATGTTACTGGCCTCAGACTTAATTCTAGTCCTCCATGAGAAACAGATGTcccaatcttctcctcctcttcttcatctttaatgttgacattcagctccagtgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagagcaaactgggctccactgtcacaatcaggacccagtgactgtaggtttggactcagtgtggaaggagagtgTCGTGGAAATACCGGAGCCTGTGAGTTCAAgaagactttattacaaagtaaTAGAACCCGAGCTGGTTCATGAAGCAAGTGTCTTTCCAGCCTTGGCATACACTTGTTATAGTTTTCCTCCTTTACGTAACTCCTCTTTATGTTAATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592258, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729957 True 581 lncRNA 0.46 2 5324773 5329556

Neighbor

gene id symbol gene type direction distance location
LOC118941027 NA coding upstream 49573 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 281181 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 340638 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 433788 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 576530 4654041 ~ 4748243 (+)
LOC110513970 LOC106575958 coding downstream 132346 5461902 ~ 5702970 (+)
LOC110495587 LOC106592870 coding downstream 196807 5526363 ~ 5637190 (+)
LOC118941022 NA coding downstream 243835 5573391 ~ 5576479 (+)
LOC118941025 NA coding downstream 262071 5591627 ~ 5593672 (+)
LOC110519537 LOC106592870 coding downstream 375195 5704751 ~ 5708466 (+)
G1511882 NA non-coding upstream 647 5281445 ~ 5324126 (+)
G1511895 LOC106574716 non-coding upstream 12180 5308671 ~ 5312593 (+)
G1511952 NA non-coding upstream 68982 5255402 ~ 5255791 (+)
G1512167 NA non-coding upstream 148264 5075737 ~ 5176509 (+)
G1511982 NA non-coding downstream 20077 5349633 ~ 5747483 (+)
G1512243 NA non-coding downstream 86122 5415678 ~ 5416176 (+)
G1512245 NA non-coding downstream 97806 5427362 ~ 5428372 (+)
G1512261 NA non-coding downstream 124041 5453597 ~ 5454546 (+)
G1512275 NA non-coding downstream 181329 5510885 ~ 5511162 (+)
G1512205 NA other upstream 81346 5242734 ~ 5243427 (+)
G1512182 NA other upstream 218685 5104087 ~ 5106088 (+)
G1512113 NA other upstream 456765 4865995 ~ 4868008 (+)
G1512020 NA other upstream 706821 4610018 ~ 4617952 (+)
G1512309 NA other downstream 278352 5607908 ~ 5613036 (+)
LOC110518779 dis3 other downstream 848284 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 1069207 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 1111296 6404433 ~ 6459931 (+)

Expression


Co-expression Network