G1512276 (LOC106592870)


Basic Information

Item Value
gene id G1512276
gene name LOC106592870
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5521390 ~ 5594716 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1730299
ACCATGAGAAACAGATTTcccaatcttctcctcctcttcttcatctttaatgttgaCATTCAgttccagtgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagtgcaaaatgggctccactgtcacaatcaggacccagtgactgtaggtttggactcagtgtggaaggagagagtgTCGTGGAAATATTCAGTCAATGTCTTTCCAGCCTTGGCACAAACTTTTTTATACAGTTTTCCTCCTTACCTCACACACATAGTAACTCCTCTTTATGTTAATGTTTCATCCCCTCTGGCATTTACCCACCCTTATCTTATTGCCTTGCACTAATTTTAGCTTGGTTTCACATTAGGGCATAGATTCCATTTGTGGCgtaaccatagcaacagtaaATATTAGGCCATAGCATTGGTACAAAAATAAACAGACACGCCCACTCCCAAGACAGGTGCATGTAGGGCATTTGTGGtgtaaccatagcaacagtaaATATTAGGCCATAGCAATGGTACAAAAATAAACAGACATGCCCACTCCCAAGACAGGTGCATGTTTAATGGTGCCTAATGACCT
>TU1730300
ACCATGAGAAACAGATTTcccaatcttctcctcctcttcttcatctttaatgttgacgttcagctccagtgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagtgcaaactgggctccactgtcacaatcaggacccagtgactgtagGTTTGAACTCAGtgtagaaggagagaggcaggctgggtttgtcctcactgttgatgttaccgGCCTCAGACTTAATCTGAGTCAGCCAGTAGTAATA

Function

NR:

description
PREDICTED: zinc finger protein 501-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1730299 False 590 lncRNA 0.43 2 5521390 5594716
TU1730300 True 262 lncRNA 0.48 2 5521390 5564307

Neighbor

gene id symbol gene type direction distance location
LOC118941027 NA coding upstream 246190 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 477798 4895914 ~ 5043592 (+)
LOC118941222 NA coding upstream 537255 4944941 ~ 5000801 (+)
LOC110528775 LOC106575958 coding upstream 630405 4880668 ~ 4933600 (+)
LOC110516278 LOC106600620 coding upstream 773147 4654041 ~ 4748243 (+)
LOC110519537 LOC106592870 coding downstream 110035 5704751 ~ 5708466 (+)
LOC110512403 gas6 coding downstream 328787 5923503 ~ 5949854 (+)
LOC118941026 NA coding downstream 352031 5946747 ~ 5947078 (+)
LOC118941029 NA coding downstream 352826 5947542 ~ 5948154 (+)
LOC110519329 atp4b coding downstream 407028 6001744 ~ 6007442 (+)
G1512275 NA non-coding upstream 10228 5510885 ~ 5511162 (+)
G1512261 NA non-coding upstream 66844 5453597 ~ 5454546 (+)
G1512245 NA non-coding upstream 93018 5427362 ~ 5428372 (+)
G1512243 NA non-coding upstream 105214 5415678 ~ 5416176 (+)
G1511978 LOC106592258 non-coding upstream 191834 5324773 ~ 5329556 (+)
G1511955 LOC106574716 non-coding downstream 51108 5645824 ~ 5651171 (+)
G1511977 NA non-coding downstream 253113 5847829 ~ 5862162 (+)
G1512406 NA non-coding downstream 297891 5892607 ~ 5892871 (+)
G1512407 NA non-coding downstream 298269 5892985 ~ 5893193 (+)
G1512205 NA other upstream 277963 5242734 ~ 5243427 (+)
G1512182 NA other upstream 415302 5104087 ~ 5106088 (+)
G1512113 NA other upstream 653382 4865995 ~ 4868008 (+)
G1512020 NA other upstream 903438 4610018 ~ 4617952 (+)
G1512309 NA other downstream 13192 5607908 ~ 5613036 (+)
LOC110513970 LOC106575958 other downstream 69252 5461902 ~ 5702970 (+)
LOC110518779 dis3 other downstream 583124 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 804047 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 846136 6404433 ~ 6459931 (+)

Expression


Co-expression Network