G1511955 (LOC106574716)


Basic Information

Item Value
gene id G1511955
gene name LOC106574716
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 5645824 ~ 5651171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1729934
GTCAAAAAGATgagccatatcatcctccactcactatcacaagggttagtaactacacagactaatTTCATATCCTCgaccactcactatcacaagggttagtaactacagactcatttcatatcatcctccactcactatcacaagggttagaaaCTACACACACTAATTTCATAGAACTTTAAAACACTGGCAGTTTGTCTACTTCACTTCTTTAGTCTACTCTCTGATCACTCCAGATAgaccagtgaataaaacaaatgctGGCAATACTGGTGTCAAACCAGGCAAGTCTGAGTACCATGAAATAACATCTACCTTCTCATTGAAACAGTTCATCATGAAACAGTTCTACAGCAACTTTTCATAAACAGTGGGAAGTTGGAATGAAAAACAAACTTAGTTAGTTAGAACCTGCTCTTACCATGAGAAACAGATGTCccaatctcctcctcctcttcttcatctttaatgttgacattcagctccagtgtttgactgcagtcttccagcttcactgatgccatctctggatcctgcagagcaaactgggctccactgtcacaatcaggacccagtgactgtaggtttggactcagtgtggaaggagagaggcaggttgggtttgtcctcactgttgatATTACTGGCCTCAGACTTA

Function

NR:

description
uncharacterized protein LOC110515905

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1729934 True 661 lncRNA 0.42 2 5645824 5651171

Neighbor

gene id symbol gene type direction distance location
LOC110495587 LOC106592870 coding upstream 8634 5526363 ~ 5637190 (+)
LOC118941025 NA coding upstream 52480 5591627 ~ 5593672 (+)
LOC118941022 NA coding upstream 69345 5573391 ~ 5576479 (+)
LOC118941027 NA coding upstream 370624 5267808 ~ 5275200 (+)
LOC110495595 LOC106574881 coding upstream 602232 4895914 ~ 5043592 (+)
LOC110519537 LOC106592870 coding downstream 53580 5704751 ~ 5708466 (+)
LOC110512403 gas6 coding downstream 272332 5923503 ~ 5949854 (+)
LOC118941026 NA coding downstream 295576 5946747 ~ 5947078 (+)
LOC118941029 NA coding downstream 296371 5947542 ~ 5948154 (+)
LOC110519329 atp4b coding downstream 350573 6001744 ~ 6007442 (+)
G1512276 LOC106592870 non-coding upstream 51108 5521390 ~ 5594716 (+)
G1512300 NA non-coding upstream 65777 5568478 ~ 5580047 (+)
G1512295 NA non-coding upstream 83851 5560879 ~ 5561973 (+)
G1511977 NA non-coding downstream 196658 5847829 ~ 5862162 (+)
G1512406 NA non-coding downstream 241436 5892607 ~ 5892871 (+)
G1512407 NA non-coding downstream 241814 5892985 ~ 5893193 (+)
G1512410 NA non-coding downstream 244313 5895484 ~ 5896813 (+)
G1512309 NA other upstream 32788 5607908 ~ 5613036 (+)
G1512205 NA other upstream 402397 5242734 ~ 5243427 (+)
G1512182 NA other upstream 539736 5104087 ~ 5106088 (+)
G1512113 NA other upstream 777816 4865995 ~ 4868008 (+)
LOC110513970 LOC106575958 other downstream 12797 5461902 ~ 5702970 (+)
LOC110518779 dis3 other downstream 526669 6172823 ~ 6188926 (+)
LOC110495361 LOC106575795 other downstream 747592 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 other downstream 789681 6404433 ~ 6459931 (+)
LOC110514219 LOC106594890 other downstream 899474 6493403 ~ 6573608 (+)

Expression


Co-expression Network