G1512548


Basic Information

Item Value
gene id G1512548
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6330474 ~ 6332939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1730616
cactgacctagggcgtagtgggagtatcactgacctagggcgtagtgggagtatcactgacctagggcgtagtagtataccactgacctagggcgtagtagGCAATCCTCAGAGGCAGGGCCAGAGTGAAGAGGACGTCGGAGGCGGCCAGGTTGGCAGAGTAGAGCGTGGTAGAGTTGATCTGGGCCAGGTTGGGTCTGATGACGTGCAGTGCCAGGGCGTTACCTAGGAGGCCGAGCGTGAAGACCAGGCTGTAGTGGAGAGACATGAGGACGCGGGCGACGGGGCGGTGGTCGTACAGGTTGGTGCAgaccagggaggaggaggtgttggAGTCCAGGTTCACAGTGGAGTTCACACCCTCCGACCACGACATGATGGTTAGTAACAGGAAGTGTAAATCTGAAGCACAGCAGGTGAGGGTTTGGGTGAAGAGACTTGCAGTAGTTTAAAATCAACGGACTAAATAAGAGCAATATGTTCCATTTGTCTTGCATCATTTGCTCTATAACACTCATGTACGCATGCTGTAACTGCAACCCAAAATATACCCACAATTTGTGGGGGGAAATTCACTTTCCtgtgaaaaaatatttaatagaaagtgactcaagtgaaagtcagccAGTGAAATActtcttgagtaaaagtctaaaagtatttgggttgtaaatatatttaagtgtaaaaagtaaatgtaattgctcaaatatacttgtgtgaaaagtaaaagtgaaagtataaatgacttgtttagtgagtcctccaggccgGAGGCAGGAGGGATGACCACGTGTGCTCTTGAAAGtgcgtgaatttgacaattttcctgtcctgctaataaaagcattgaaaatgtaatgagtactttgggtgtcaaggaaaatgtacggagtaaaaagtacaatattttatttaggaatgtaagtgaagtaaaagtaacattgtcaaaaatataaaaattgAAGTACAGATTCTACAAAAAACTACTGAAGTACTTTAATATATTTGTACTTAAGTACGTTACaccactggtattatactgtactatatctgTGTAAACTACATACTGTAATATAGTACCGTACCTGTgtaaactacatactgtattatactatcaTACCTGTGTAAACcacatactgtatgatactgcATCATACCTGTGTAGACcacatactgtatgatactgtactCACCAGATGGAAGCGCTCTTAACTCTCAGTCGTCAGTGGTGTTTCAGGAGGGACGTTGGTCCCCTGTGTGACTCCAGAGCCATGTGTCAGGTCAGCCAGAGAATGAAACTCAACAAGTATTAGATATATGTCTCTTTTCTTTGCGTCAGCTACGGCCGACTAGGCAGAAGTGTGCAGCTTCTGCCACAGCCAGTACCCAG
>TU1730617
CTGTGTAAAccacatactgtattatactatcaTACCTGTGTAAACGACAGTGTAATACTGTATCATACCTGTGTAAACCACATACTGAATCATACCTGTGTAGACCACATACTGCATCATACCTGTGTAGACcacatactgtatgatactgtactCACCAGATGGAAGCGCTCTTAACTCTCAGTCGTCAGTGGTGTTTCAGGAGGGACGTTGGTCCCCTGTGTGACTCCAGAGCCATGTGTCAGGTCAGCCAGAGAATGAAACTCAACAAGTATTAGATATATGTCTCTTTTCTTTGCGTCAGCTACGGCCGACTAGGCAGAAGTGTGCAGCTTCTGCCACAGCCAGTACCCAG

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1730616 False 1393 lncRNA 0.44 4 6330474 6332939
TU1730617 True 355 lncRNA 0.45 3 6332470 6332939

Neighbor

gene id symbol gene type direction distance location
mzt1 NA coding upstream 127226 6201385 ~ 6203248 (+)
LOC110518779 dis3 coding upstream 141548 6172823 ~ 6188926 (+)
LOC118941019 tgfbrap1 coding upstream 172498 6146666 ~ 6157976 (+)
LOC110527156 LOC106575911 coding upstream 233873 6082293 ~ 6096601 (+)
LOC110511044 adprhl1 coding upstream 248291 6070774 ~ 6082183 (+)
LOC110512784 LOC106574826 coding downstream 18977 6351916 ~ 6384414 (+)
LOC110495361 LOC106575795 coding downstream 67209 6398763 ~ 6403517 (+)
LOC110496964 LOC106594657 coding downstream 71494 6404433 ~ 6459931 (+)
LOC118941080 NA coding downstream 157292 6490231 ~ 6491752 (+)
LOC110514219 LOC106594890 coding downstream 160464 6493403 ~ 6573608 (+)
G1512534 NA non-coding upstream 5097 6322878 ~ 6325377 (+)
G1512523 NA non-coding upstream 33796 6296311 ~ 6296678 (+)
G1512540 NA non-coding upstream 51093 6277582 ~ 6279381 (+)
G1512526 NA non-coding upstream 88732 6240452 ~ 6241742 (+)
G1512536 NA non-coding downstream 12783 6345722 ~ 6346181 (+)
G1513174 NA non-coding downstream 44791 6377730 ~ 6377948 (+)
G1513181 NA non-coding downstream 57101 6390040 ~ 6390317 (+)
G1513183 NA non-coding downstream 60760 6393699 ~ 6394103 (+)
LOC110513970 LOC106575958 other upstream 659141 5461902 ~ 5702970 (+)
G1512309 NA other upstream 717438 5607908 ~ 5613036 (+)
G1512205 NA other upstream 1087047 5242734 ~ 5243427 (+)
G1512182 NA other upstream 1224386 5104087 ~ 5106088 (+)
LOC110516612 LOC106574917 other downstream 375720 6705632 ~ 6710286 (+)
G1513452 NA other downstream 693269 7026208 ~ 7026810 (+)

Expression


Co-expression Network