G1513200


Basic Information

Item Value
gene id G1513200
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6461949 ~ 6462786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731442
gcaaagaggcactgagtttgaaggtaggccttgaaatatatccacaggtacacctccaacgtactcaaatgatgtcaattagcctatcagaagcttctatagccatgacatcattttctggaattttccaagctgtttaaaggcagtcaacttagtgtatggaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagaagtcctaaccgacttgccaaaactatagtttgttaacaagacatttgtggagtggttggtaaacaagttttaatgactccaacctaagtgtatgtaaacatccgacttcaactgtacatacgtatcattttgtattttttcttgGTATACCAGATTGATGTGTTTTGAAACGGTAAGCTAAAACGTTGAATTTGGTCATGTGCGGGTATGTGCCTTCACTGCCTTTTGTATGTTGTGTAGCGTCAGTATTCAAGGAAGCATCATGCTAAATATATTGGCCCACTCCACAACCTGCATCTAGAAGGGAGTGGATTTCATACTGAACTCCTCCCTTTGATGACGTAGGGGCGCCTCTACATCACCATGTCGATGGTAGAGTTGAACCACTTGGGACAAGGAGCTAGATTTATTACTGACAGACCTGAATATATCACTTTTGCAAAAAACTGTCAAAATGAAGACCAGGGTTGATGTGTTTCACTATAACTAAGCCTAAAACATCCTGGTTTTTGTCTTGAAAGTTACTCTTTAAATACTGTAGGGACTGGTAGAGGGGCTGGACGTACtgtgggga

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731442 True 838 lncRNA 0.40 1 6461949 6462786

Neighbor

gene id symbol gene type direction distance location
LOC110496964 LOC106594657 coding upstream 2018 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 coding upstream 58432 6398763 ~ 6403517 (+)
LOC110512784 LOC106574826 coding upstream 77535 6351916 ~ 6384414 (+)
ubac2 LOC106591293 coding upstream 110168 6318901 ~ 6351781 (+)
mzt1 NA coding upstream 258701 6201385 ~ 6203248 (+)
LOC118941080 NA coding downstream 27445 6490231 ~ 6491752 (+)
LOC110514219 LOC106594890 coding downstream 30617 6493403 ~ 6573608 (+)
LOC110516612 LOC106574917 coding downstream 242846 6705632 ~ 6710286 (+)
syap1 syap1 coding downstream 344493 6807279 ~ 6815407 (+)
LOC110495421 LOC106593174 coding downstream 352700 6815486 ~ 6837266 (+)
G1513211 NA non-coding upstream 35106 6425551 ~ 6426843 (+)
G1513205 NA non-coding upstream 51553 6409964 ~ 6410396 (+)
G1513204 NA non-coding upstream 54089 6407412 ~ 6407860 (+)
G1513183 NA non-coding upstream 67846 6393699 ~ 6394103 (+)
G1513197 NA non-coding downstream 1496 6464282 ~ 6464972 (+)
G1513218 NA non-coding downstream 3493 6466279 ~ 6466580 (+)
G1513201 NA non-coding downstream 5003 6467789 ~ 6468089 (+)
G1513199 NA non-coding downstream 5375 6468161 ~ 6468432 (+)
G1513253 NA non-coding downstream 29505 6492291 ~ 6492721 (+)
LOC110518779 dis3 other upstream 282838 6172823 ~ 6188926 (+)
LOC110513970 LOC106575958 other upstream 790616 5461902 ~ 5702970 (+)
G1512309 NA other upstream 848913 5607908 ~ 5613036 (+)
G1513452 NA other downstream 563422 7026208 ~ 7026810 (+)
LOC110513752 LOC106575969 other downstream 569824 7032578 ~ 7102239 (+)
G1513874 NA other downstream 963797 7426583 ~ 7426971 (+)

Expression


Co-expression Network