G1513266


Basic Information

Item Value
gene id G1513266
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6530923 ~ 6532332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731539
GTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAGCAGTAACACACACGGTAACAGTAACACTCacggtaacagtaacacacacggtaacagtaacactcagggtaacagtaacactcactgtaacagtaacac
>TU1731540
GTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCACGgtaacagtaacactcacggtaacagtaacactcacggtaacagtaacactcacggtaacagtaacactcacggtaacagtaacacacacggtaacagtaacacacacggtaacagtaacactcacggtaacagtaacacacacggtaacagtaacacacacggtaacagtaacacacacggtaacagtaacacacaagGTAACAGTAACACTCACTGTACTGTCAGGGTTCCTCCTCAGTAGAGCCAGTTAAATGGTTTTAGATAGAGGCAGAACTGATGGGCCTGTTTGTCCTGAACAGGGAAGCATTTAGTGGGATAAActttgctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU1731541
GTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACACTCAGGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCacggtaacagtaacacacacggtAACAGTAACACTCACGGTAACAGTAACACTCACGGTAACAGTAACACTCACGGTAGCAGTAACACACACGGTAACAGTAACACTCacggtaacagtaacacacacggtaacagtaacactcacggtaacagtaacacacaAGGTAACAGTAACACTCACTGTACTGTCAGGGTTCCTCCTCAGTAGAGCCAGTTAAATGGTTTTAGATAGAGGCAGAACTGATGGGCCTGTTTGTCCTGAACAGGGAAGCATTTAGTGGGATAAActttgctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731539 False 415 lncRNA 0.45 2 6530923 6531493
TU1731540 False 516 lncRNA 0.45 4 6530923 6532332
TU1731541 True 570 lncRNA 0.45 3 6530923 6532332

Neighbor

gene id symbol gene type direction distance location
LOC118941080 NA coding upstream 39171 6490231 ~ 6491752 (+)
LOC110496964 LOC106594657 coding upstream 70992 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 coding upstream 127406 6398763 ~ 6403517 (+)
LOC110512784 LOC106574826 coding upstream 146509 6351916 ~ 6384414 (+)
ubac2 LOC106591293 coding upstream 179142 6318901 ~ 6351781 (+)
LOC110516612 LOC106574917 coding downstream 173300 6705632 ~ 6710286 (+)
syap1 syap1 coding downstream 274947 6807279 ~ 6815407 (+)
LOC110495421 LOC106593174 coding downstream 283154 6815486 ~ 6837266 (+)
LOC110495417 LOC106575977 coding downstream 311027 6843359 ~ 6850547 (+)
LOC110496992 LOC106574897 coding downstream 330799 6863131 ~ 6907469 (+)
G1513257 NA non-coding upstream 115 6530526 ~ 6530808 (+)
G1513263 NA non-coding upstream 26048 6504427 ~ 6504875 (+)
G1513253 NA non-coding upstream 38202 6492291 ~ 6492721 (+)
G1513199 NA non-coding upstream 62491 6468161 ~ 6468432 (+)
G1513201 NA non-coding upstream 62834 6467789 ~ 6468089 (+)
G1513273 NA non-coding downstream 12341 6544673 ~ 6546166 (+)
G1513277 NA non-coding downstream 30687 6563019 ~ 6563520 (+)
G1513329 NA non-coding downstream 178570 6710902 ~ 6712240 (+)
G1513330 NA non-coding downstream 180048 6712380 ~ 6712819 (+)
G1513331 NA non-coding downstream 181482 6713814 ~ 6714671 (+)
LOC110518779 dis3 other upstream 351812 6172823 ~ 6188926 (+)
LOC110513970 LOC106575958 other upstream 859590 5461902 ~ 5702970 (+)
G1512309 NA other upstream 917887 5607908 ~ 5613036 (+)
LOC110514219 LOC106594890 other downstream 18313 6493403 ~ 6573608 (+)
G1513452 NA other downstream 493876 7026208 ~ 7026810 (+)
LOC110513752 LOC106575969 other downstream 500278 7032578 ~ 7102239 (+)
G1513874 NA other downstream 894251 7426583 ~ 7426971 (+)

Expression


Co-expression Network