G1513329


Basic Information

Item Value
gene id G1513329
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6710902 ~ 6712240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731620
ATACAGGAtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTGGTGTAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGGTAACAGTACTGTGGTGTAATCCACAGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGGGTAACAGTACTGTGGTATAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGAgtaacagtactgtagtgtaaacAGGGCCATACAGGgtaacagtactgtag
>TU1731621
ATACAGGAtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTGGTGTAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGGTAACAGTACTGTGGTGTAATCCACAGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGTCATACAGGGTCacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGGGTAACAGTACTGTAATGTAAACCAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGTCATACAGAGTAACAGTACTGTGGTATAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaacAGGGTCATACAGAgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGGGTAACAGTACTGTGGTATAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGAgtaacagtactgtagtgtaaacAGGGCCATACAGGgtaacagtactgtag
>TU1731622
ATACAGGAtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTGGTGTAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGGTAACAGTACTGTGGTGTAATCCACAGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccaGGTCATACAGGGTCacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGCCATACAGGGTAACAGTACTGTAATGTAAACCAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTAATGTAAACCAGGCCATACAGGGTAACAGTTCTGTAGTGTAAACCAGGCCATACATGgtaacagtactgtagtgtaaaccTAGGCGATACAGGAtaacagtactgtag
>TU1731623
ATACAGGAtaacagtactgtagtgtaaaccaGGCCATACAGGGTAACAGTACTGTGGTGTAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaaccaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGGTAACAGTACTGTGGTGTAATCCACAGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaaccacaGGCCATACAGGgtaacagtactgtagtgtaaacAGGGTCATACAGAGTAACAGTACTGTGGTATAAACCACAGGCCATACAGGgtaacagtactgtagtgtaaacAGGATCTGCAAAGGAACATCATACACAGCGGGGTAACTTCCTGCTTAAAGTCACACCGCCGGGTCACTTCCTGCTTAAAGTCAGACTTCAACAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731620 False 452 lncRNA 0.46 2 6710902 6712100
TU1731621 False 843 lncRNA 0.45 2 6710902 6712100
TU1731622 False 556 lncRNA 0.45 2 6710902 6711635
TU1731623 True 454 lncRNA 0.46 3 6710902 6712240

Neighbor

gene id symbol gene type direction distance location
LOC110516612 LOC106574917 coding upstream 616 6705632 ~ 6710286 (+)
LOC110514219 LOC106594890 coding upstream 137294 6493403 ~ 6573608 (+)
LOC118941080 NA coding upstream 219150 6490231 ~ 6491752 (+)
LOC110496964 LOC106594657 coding upstream 250971 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 coding upstream 307385 6398763 ~ 6403517 (+)
syap1 syap1 coding downstream 95039 6807279 ~ 6815407 (+)
LOC110495421 LOC106593174 coding downstream 103246 6815486 ~ 6837266 (+)
LOC110495417 LOC106575977 coding downstream 131119 6843359 ~ 6850547 (+)
LOC110496992 LOC106574897 coding downstream 150891 6863131 ~ 6907469 (+)
LOC118941079 LOC106572464 coding downstream 235072 6947312 ~ 6958804 (+)
G1513277 NA non-coding upstream 147382 6563019 ~ 6563520 (+)
G1513273 NA non-coding upstream 164736 6544673 ~ 6546166 (+)
G1513266 NA non-coding upstream 178570 6530923 ~ 6532332 (+)
G1513257 NA non-coding upstream 180094 6530526 ~ 6530808 (+)
G1513263 NA non-coding upstream 206027 6504427 ~ 6504875 (+)
G1513330 NA non-coding downstream 140 6712380 ~ 6712819 (+)
G1513331 NA non-coding downstream 1574 6713814 ~ 6714671 (+)
G1513332 NA non-coding downstream 2531 6714771 ~ 6715516 (+)
G1513334 NA non-coding downstream 3447 6715687 ~ 6716044 (+)
G1513333 NA non-coding downstream 3981 6716221 ~ 6717418 (+)
LOC110518779 dis3 other upstream 531791 6172823 ~ 6188926 (+)
G1513452 NA other downstream 313968 7026208 ~ 7026810 (+)
LOC110513752 LOC106575969 other downstream 320370 7032578 ~ 7102239 (+)
G1513874 NA other downstream 714343 7426583 ~ 7426971 (+)
G1513922 NA other downstream 908056 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 1046508 7758036 ~ 7801058 (+)

Expression


Co-expression Network