G1513408


Basic Information

Item Value
gene id G1513408
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6922300 ~ 6923956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731731
TCAtgaatcatgggaccaacactttacaccaggaagtaaatgagttaatagaccaataagaaagacgtcgaaacctctctgccaataacagataATTTACTTTACACGCTGCCTtttatgaggttggaataatactgtcaaATTTAGAGAATTACGATAATGACCTTTTAAGTGTAAGAGGtgtttaaaaatacatttcagcCTGTTCTGGTTGGATGGTTTtgacctgcctggtgacatcaccaggaagtaattgagttaatagaccaataagaaagacgtcgaaacctctctgccaataacagatcATTTTCAGTTTtccagaccactcccagacagtcatagctaaattcttgcttgagaaatagctCTTTGCTAAAAGAAGCTATTTtagtttctttttgaccattttaatgaaaaacaatcacagtaaggtacttacccagaaattatttaatattgagattttaaaaaattaaaacatcTGCATTGGACCTTTGACCCTGAAGAGACGATGTAGCAGTCTGGTCTCAGAGTTACAGCCCTGTCTCAGACCTAGAAAAGATGGGGCAAAGTGCTGTTGGTCTGCAGAGCAGAGCTAGGACATGCCGCGGGGAGCTCTTGTCTGCGTTGTCTGTAGAAACCTCACGTGTGTTGGTCCACCTCCATATCAGTAGCTAGTGAGAGTAGTGTGTTCTCATCTGAGACATGTTCTACACCACAGGGAGAAGGGTGACCACATCTCCTAGATATATTCCTGACTCATGCAACTGCATGTGCTACACTGAGTGTATGGTTGACCACAAGACTGTTAAAACCTGCAGAGCTAAAGCCAAGCTAAAGCATGGCTCCCCTCAAGCCTGCTGCTGGTTTTTGTAGTACTCTCTCAGCCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCTAGCCGCTGGTCTTGGTAATTCTCTCAACCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCTAGCCGCTGGTCTTTGTAGTTCTATCAACCTAGCTGCTGGTCTTTGTAGTTCTCTCAGCCCTGCTGCCAGTGTTGgctcactgagctaaagccaaGTCATTGCCCGGGTAGCTAATGTGAGCTACAGCTCTACAACAAGGTTTCTCTCAGCCCTGCTGTTGGTCCTTAACATCCAGTTTGTGCACCACCCTGAAGGCCTCTAGGAACTCGTTGAAGTCGATGCTACCGTCCTTGTTGAAGTCTATACTCTTAGCCAGTTCATCTATGGCCCGGTCATCCACCTCCACACCTAGGTGAGCACTAAACAGATGCCAGGTCTGACGGAACTCCTCGATGGATATCTGA

Function

NR:

description
serine/threonine-protein phosphatase with EF-hands 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731731 True 1417 lncRNA 0.45 2 6922300 6923956

Neighbor

gene id symbol gene type direction distance location
LOC110496992 LOC106574897 coding upstream 14831 6863131 ~ 6907469 (+)
LOC110495417 LOC106575977 coding upstream 71753 6843359 ~ 6850547 (+)
LOC110495421 LOC106593174 coding upstream 85034 6815486 ~ 6837266 (+)
syap1 syap1 coding upstream 106893 6807279 ~ 6815407 (+)
LOC110516612 LOC106574917 coding upstream 212014 6705632 ~ 6710286 (+)
LOC118941079 LOC106572464 coding downstream 23356 6947312 ~ 6958804 (+)
LOC110513752 LOC106575969 coding downstream 108622 7032578 ~ 7102239 (+)
LOC110500299 ace2 coding downstream 396537 7320493 ~ 7339446 (+)
LOC110496985 LOC106563837 coding downstream 458019 7381975 ~ 7406885 (+)
LOC110495413 pir coding downstream 482970 7406926 ~ 7430025 (+)
G1513407 NA non-coding upstream 2040 6920037 ~ 6920260 (+)
G1513404 NA non-coding upstream 9359 6912313 ~ 6912941 (+)
G1513399 NA non-coding upstream 65421 6856256 ~ 6856879 (+)
G1513396 NA non-coding upstream 90733 6830664 ~ 6831567 (+)
G1513394 NA non-coding upstream 96804 6825154 ~ 6825496 (+)
G1513409 LOC106594775 non-coding downstream 2884 6926840 ~ 6927169 (+)
G1513413 NA non-coding downstream 15839 6939795 ~ 6941918 (+)
G1513441 NA non-coding downstream 83354 7007310 ~ 7008549 (+)
G1513461 NA non-coding downstream 113187 7037143 ~ 7037849 (+)
G1513462 NA non-coding downstream 116584 7040540 ~ 7040999 (+)
LOC110514219 LOC106594890 other upstream 351821 6493403 ~ 6573608 (+)
LOC110496964 LOC106594657 other upstream 462731 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 other upstream 519386 6398763 ~ 6403517 (+)
LOC110518779 dis3 other upstream 743189 6172823 ~ 6188926 (+)
G1513452 NA other downstream 102252 7026208 ~ 7026810 (+)
G1513874 NA other downstream 502627 7426583 ~ 7426971 (+)
G1513922 NA other downstream 696340 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 834792 7758036 ~ 7801058 (+)

Expression


Co-expression Network