G1513409 (LOC106594775)


Basic Information

Item Value
gene id G1513409
gene name LOC106594775
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 6926840 ~ 6927169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731732
TGGAGGTTGTCGGTGGGGCTCAGCATGCTGGGAGAAAGGCAGCGGCACAGAGTGAGGCGGGACGACCCCCGGGGGGAGCAgagtgaggatgaggaggaagaggaggagctgcCCTGTCTGGTGAGGTGACGTCTCTTCTTGGGGGTGTTGCCATGGTCCTGACCCCTGCTCCTACACCTGGGGCTCTCTGGCTGGCCCCTGCTCCTACACCTGGGTCTCTCTGGCTGGCCCCTGCTCCTACACCTGGGGCTCTCTGGCTGGCCCCTGCTCCTACACCGGGGGCTCTCTGGCTGGCCCCTGCTCCTACACCGGGGGCTCTCTGGCTGGCCC

Function

NR:

description
serine/threonine-protein phosphatase with EF-hands 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731732 True 330 lncRNA 0.67 1 6926840 6927169

Neighbor

gene id symbol gene type direction distance location
LOC110496992 LOC106574897 coding upstream 19371 6863131 ~ 6907469 (+)
LOC110495417 LOC106575977 coding upstream 76293 6843359 ~ 6850547 (+)
LOC110495421 LOC106593174 coding upstream 89574 6815486 ~ 6837266 (+)
syap1 syap1 coding upstream 111433 6807279 ~ 6815407 (+)
LOC110516612 LOC106574917 coding upstream 216554 6705632 ~ 6710286 (+)
LOC118941079 LOC106572464 coding downstream 20143 6947312 ~ 6958804 (+)
LOC110513752 LOC106575969 coding downstream 105409 7032578 ~ 7102239 (+)
LOC110500299 ace2 coding downstream 393324 7320493 ~ 7339446 (+)
LOC110496985 LOC106563837 coding downstream 454806 7381975 ~ 7406885 (+)
LOC110495413 pir coding downstream 479757 7406926 ~ 7430025 (+)
G1513408 NA non-coding upstream 2884 6922300 ~ 6923956 (+)
G1513407 NA non-coding upstream 6580 6920037 ~ 6920260 (+)
G1513404 NA non-coding upstream 13899 6912313 ~ 6912941 (+)
G1513399 NA non-coding upstream 69961 6856256 ~ 6856879 (+)
G1513396 NA non-coding upstream 95273 6830664 ~ 6831567 (+)
G1513413 NA non-coding downstream 12626 6939795 ~ 6941918 (+)
G1513441 NA non-coding downstream 80141 7007310 ~ 7008549 (+)
G1513461 NA non-coding downstream 109974 7037143 ~ 7037849 (+)
G1513462 NA non-coding downstream 113371 7040540 ~ 7040999 (+)
LOC110514219 LOC106594890 other upstream 356361 6493403 ~ 6573608 (+)
LOC110496964 LOC106594657 other upstream 467271 6404433 ~ 6459931 (+)
LOC110495361 LOC106575795 other upstream 523926 6398763 ~ 6403517 (+)
LOC110518779 dis3 other upstream 747729 6172823 ~ 6188926 (+)
G1513452 NA other downstream 99039 7026208 ~ 7026810 (+)
G1513874 NA other downstream 499414 7426583 ~ 7426971 (+)
G1513922 NA other downstream 693127 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 831579 7758036 ~ 7801058 (+)

Expression


Co-expression Network