G1513457 (LOC106575808)


Basic Information

Item Value
gene id G1513457
gene name LOC106575808
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7103448 ~ 7105917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731798
AATCACGTACAAACCATCAAATGACTGATCCTAAATCAGATATGAAATACTGTATAGGCCTAGCAAAGCATCAACAAATGTACCTTTTCACATGGAAAGTAGCAGACGATGGACAGCCACATTTCATCTGTGAACTGACAGCATTTTGTAAAAGGAGAAAGTCCTCTTTTAACAGTTTATATATTGATGAATTAAACATGAATGTAAGGTAAAAATGCCAGACGACTACAAATACAGTCACAACACTACAGCAACAAAGTCGTCCTTCGTCTCTCAACACATGGAAGAGATATTGTCCATGTCAGGAAGATTGTCCCCAATCGTCTGCCGTAGTCACAGCACTTGGCCAATGTCTCAGAAGAACGCCTTGTAACTTCTGTCAACAACAAGAGCTAGCAGTAAAGACACGTGACCAACTGGATTTGAACCTCGGGTCTCTTGTGtcccacaagactgtgttagcctgttgagctaaagcctaggcattagctaAGCTCGGGGAGCTAACGCAAGTCTTCAGGTCTTAGTCCAGGATAGTTCACCTCATCACCACCTCCTTTATGTAACAGAGACCGCCCTGTCTGTCTGACCCGGGATTCGATCCCACTTCTACAATGACACTTCACGCTCCAGCCTGGTCCCACATCTGCAAgacagtacaaacagatctgggaccaggctaactctCTACTTCCTGGGGCAGAAGGCAGCCAGACGTTGCTTCTTGATGGGGAGGATGTGGATCTCCTGTGAACTGACCTTCTTCAGTTTGATGGCCTGTCTGTTCCTGGGGAGGTTAGGGTCCTTCTGCTCCACCACATGGTGTCCtctggttagaggcagagaaccGTAACACTGATGTAACAGCGCCCCCGTGTGGCCGGAGGAGTCGTGTTGTTTAATAGACAGGCTCTTACTGGACAGCCCTGAGAGAGACTTGATCTTCCCACAGAAGATGGCGGTGGTGGGGATCGCGTCTTTGACCGCCACGATGACTTTGGCTGTTTGAGAGGTGTGAAAGATCTCAAAGTTGGAGCtaccgctgctgctactgctctTGGGCTCGCTGCTGGGTCTATTACCGCTCCCACCTCCATCCACAACCGCCCACTGACGCCGTCTACTGAATTCTACATGGGTTACACCGTTCAACAGGCTCGGGTGGTGGTGAAGCTTCTGAGTGCACTCCGCAGGCTTTAAGACCTCCAGAGAAACAGATGTAGTGCCCTCGGGTGAAGGGAGCCAAGCTGTAGTAGTGCCCTCGGAAGAAGTGTGCCAGTCCCGCGATGAAGGACGCTCTTTTCTTTTCTGTTTACTAGCTACAGACAGGTCGAGGACAGTGTCATCGTGTTGTTGAAATGCCATTTCCTGCTTTGGTTGTATTATGGGAGGGGATTTCACTGATAGGTCAAGCACCTCCCCCTCGGGGACCATggcaacagaggacagagaggCCATTGACGATGGAGGGTAAAGAGTCATAATGTTACCGTGTGGTGGAGGACTGACGATCTCCTCATAGTTAGTCTGTGTGCTTTTAGTCACCATACAGGCTGGTTTAGAGGGGTCAGAGAATCCTTTGGACTCCTGGCTCTGTGGGacggggatagggagagggatgggtagaggcaCAGGGAGAGGAACAATGACAGGGTAGGGGACCAGGAGGGTGGCAGGGGGTACCAGGGGGGCTAGCGGGGAGCTGTAGGggtaggagaggggtggaggttgGGGTTGGGATGGGGGGAACGAGGCTGAAGCAAAGGGGTCAGTTGGGGTTGACCCCGCTGGGTGACAGGAAGAGGAGTTGGGGTTGGTCTGTGCAGAAAACAGGTCCTGTATGAGGGCAGCGAATGCCGG

Function

NR:

description
retinoic acid-induced protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731798 True 1860 lncRNA 0.51 3 7103448 7105917

Neighbor

gene id symbol gene type direction distance location
LOC110513752 LOC106575969 coding upstream 1209 7032578 ~ 7102239 (+)
LOC118941079 LOC106572464 coding upstream 144644 6947312 ~ 6958804 (+)
LOC110496992 LOC106574897 coding upstream 195979 6863131 ~ 6907469 (+)
LOC110495417 LOC106575977 coding upstream 252901 6843359 ~ 6850547 (+)
LOC110495421 LOC106593174 coding upstream 266182 6815486 ~ 6837266 (+)
LOC110500299 ace2 coding downstream 214576 7320493 ~ 7339446 (+)
LOC110496985 LOC106563837 coding downstream 276058 7381975 ~ 7406885 (+)
LOC110495413 pir coding downstream 301009 7406926 ~ 7430025 (+)
LOC110495412 vegfd coding downstream 325905 7431822 ~ 7448743 (+)
LOC110495411 LOC106574896 coding downstream 408651 7514568 ~ 7532080 (+)
G1513482 NA non-coding upstream 3135 7099220 ~ 7100313 (+)
G1513480 NA non-coding upstream 7099 7095091 ~ 7096349 (+)
G1513462 NA non-coding upstream 62449 7040540 ~ 7040999 (+)
G1513461 NA non-coding upstream 65599 7037143 ~ 7037849 (+)
G1513486 NA non-coding downstream 11441 7117358 ~ 7117641 (+)
G1513487 NA non-coding downstream 12932 7118849 ~ 7119567 (+)
G1513490 NA non-coding downstream 24056 7129973 ~ 7130616 (+)
G1513491 NA non-coding downstream 25153 7131070 ~ 7131304 (+)
G1513492 NA non-coding downstream 27702 7133619 ~ 7133891 (+)
G1513452 NA other upstream 76638 7026208 ~ 7026810 (+)
LOC110516612 LOC106574917 other upstream 393400 6705632 ~ 6710286 (+)
LOC110514219 LOC106594890 other upstream 532969 6493403 ~ 6573608 (+)
LOC110496964 LOC106594657 other upstream 643879 6404433 ~ 6459931 (+)
G1513874 NA other downstream 320666 7426583 ~ 7426971 (+)
G1513922 NA other downstream 514379 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 652831 7758036 ~ 7801058 (+)
G1514045 LOC106574979 other downstream 907943 8013860 ~ 8015030 (+)
G1514180 NA other downstream 1241310 8347227 ~ 8412799 (+)

Expression


Co-expression Network