G1513487


Basic Information

Item Value
gene id G1513487
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 7118849 ~ 7119567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1731834
aacacaacatcacagcaccacaacatcacagcaccacaacaccacaacataccagcaccacaacaccacagcaccacaacatcacaacaccaCAGACAGCATCAAaacataacacaacaacacagcaccacaacaTAACAGCACAACACCACAGCACCACAACATAACAGCACAACACCACAGCACTTCACAGCACCACAACACCACAGACAGCATCAAAACATAACACAACAGCACCTCAAGATCACAGACAGCATCACATCATAACACAACACCACAGCACCACAACATAACAGCACAACACCACAGCACATCACCACAACACCACAGACAGcatcacaacataacacaacaccgCAGACAGcatcacaacataacacaacaccacagacagcatcacaacataacacaacaccacagcacatcaccacaacaccacagacagcatcacaacataacacaacaccgCAGACAGcatcacaacataacacaacaccacAGCACCTCAAGATCACTGACAGCATCACATCATAACACAACACCACAGACAGCATCACATCATAACACAACACCGCAGCACCTCAAGATCACAGACAGCATCACATCATAACACAAGACCACTGACAGcatctgtcacgtcctgaccttagttccttttttatgtctttattttggtttggtcagggcgggAGTTgcggtgggtattctatgttttgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1731834 True 719 lncRNA 0.46 1 7118849 7119567

Neighbor

gene id symbol gene type direction distance location
LOC110513752 LOC106575969 coding upstream 16610 7032578 ~ 7102239 (+)
LOC118941079 LOC106572464 coding upstream 160045 6947312 ~ 6958804 (+)
LOC110496992 LOC106574897 coding upstream 211380 6863131 ~ 6907469 (+)
LOC110495417 LOC106575977 coding upstream 268302 6843359 ~ 6850547 (+)
LOC110495421 LOC106593174 coding upstream 281583 6815486 ~ 6837266 (+)
LOC110500299 ace2 coding downstream 200926 7320493 ~ 7339446 (+)
LOC110496985 LOC106563837 coding downstream 262408 7381975 ~ 7406885 (+)
LOC110495413 pir coding downstream 287359 7406926 ~ 7430025 (+)
LOC110495412 vegfd coding downstream 312255 7431822 ~ 7448743 (+)
LOC110495411 LOC106574896 coding downstream 395001 7514568 ~ 7532080 (+)
G1513486 NA non-coding upstream 1208 7117358 ~ 7117641 (+)
G1513457 LOC106575808 non-coding upstream 12932 7103448 ~ 7105917 (+)
G1513482 NA non-coding upstream 18536 7099220 ~ 7100313 (+)
G1513480 NA non-coding upstream 22500 7095091 ~ 7096349 (+)
G1513490 NA non-coding downstream 10406 7129973 ~ 7130616 (+)
G1513491 NA non-coding downstream 11503 7131070 ~ 7131304 (+)
G1513492 NA non-coding downstream 14052 7133619 ~ 7133891 (+)
G1513494 NA non-coding downstream 18987 7138554 ~ 7139281 (+)
G1513496 NA non-coding downstream 25248 7144815 ~ 7145465 (+)
G1513452 NA other upstream 92039 7026208 ~ 7026810 (+)
LOC110516612 LOC106574917 other upstream 408801 6705632 ~ 6710286 (+)
LOC110514219 LOC106594890 other upstream 548370 6493403 ~ 6573608 (+)
LOC110496964 LOC106594657 other upstream 659280 6404433 ~ 6459931 (+)
G1513874 NA other downstream 307016 7426583 ~ 7426971 (+)
G1513922 NA other downstream 500729 7620296 ~ 7621941 (+)
LOC110511355 LOC106592813 other downstream 639181 7758036 ~ 7801058 (+)
G1514045 LOC106574979 other downstream 894293 8013860 ~ 8015030 (+)
G1514180 NA other downstream 1227660 8347227 ~ 8412799 (+)

Expression


Co-expression Network