XLOC_003443


Basic Information

Item Value
gene id XLOC_003443
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24176418 ~ 24177651 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008400
TCAGCATAGAGACACTGCTCTTCTTTGTTGAAAGGTTGAGGTGTTTTGGGCATCTAAGATGCCTCCTGTTCATTGTCCAGTGAAGGTGCCTCCAACAGGGAGGAAAACCTATGGCAGACCCAGGCCAGCCTGGAGGGATTATATCTTTTGGCTGGCCCTGGAAAGCCTTGGGACAAGTCCTGGATAAGCAGAGGAAAAGGCTTCATACAGTAGTCTTGCTTGCCTGCCCCCAGTCACCCCTAGAGAGTCATTCAGACCTTTAGTTTCCACTCACCTTCCTGAAATGGCCTCTAATCATTCCATCTCCTGCTTATCACTGCATAATTGGAGGTACTGCAATTAGGGAACTCTAATTGATCCAACTACGGACAACAACACTGGACTGACGCAGCAGTTTAGCCGAGGCTAATTCTCAGCCGCAGTGTTAGAGAACACTAGATAAATCAACAAGGACAGAACAACACATTTCACTCTGGGACACTTGGAAAAGTGGCTCAAAAGCACACCGTTATTGGCACATTCGCTCGGACCGGCCCACTGGAAAAGCAGGTTGCAGTGAAATATAAGTGTCCAATTATTCACACTGTAAAACAGCTATCTGCTTAGCCAAGCACCTAGGGAAATTCAATAAGTTGTTCCACAGATGAGGCTTGGCTTTTACTGGACACAGATTTTGTGAGCATCAATCACAGAGCCACACAGACGAACTAGTCTGCCGATACAAGAAACCGGACAGACGGAGTAAAATAAATGGCGTGCTCTCTCAGCAGGCCTTAAAACTAAAAGTAAGACGTTGTGGGCCAACCTGGGAtgttttatttgaaaaagaatggcCTCATGCGTGTACTTTTTTGCTCGGGgagcattattgttttttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008400 True 879 lncRNA 0.46 2 24176418 24177651

Neighbor

gene id symbol gene type direction distance location
XLOC_003441 FP102969.1 coding upstream 25201 24116083 ~ 24151217 (+)
XLOC_003440 NA coding upstream 92830 24061156 ~ 24083588 (+)
XLOC_003439 maf1 coding upstream 119809 24046179 ~ 24056609 (+)
XLOC_003438 zc3h11a coding upstream 131832 24034345 ~ 24044586 (+)
XLOC_003437 ovgp1 coding upstream 144228 24027715 ~ 24032190 (+)
XLOC_003444 AL831791.1 coding downstream 1172 24178823 ~ 24178938 (+)
XLOC_003445 rem1 coding downstream 136280 24313931 ~ 24332052 (+)
XLOC_003446 rbm39a coding downstream 161711 24339362 ~ 24356093 (+)
XLOC_003447 BX072564.1 coding downstream 402928 24580579 ~ 24581114 (+)
XLOC_003448 syt6b coding downstream 443091 24620742 ~ 24664031 (+)
XLOC_003369 CR854846.2 misc upstream 8053336 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 11464422 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 11482155 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 11490819 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 11496390 12679732 ~ 12680028 (+)
XLOC_003436 NA non-coding upstream 151842 24015835 ~ 24024576 (+)
XLOC_003432 NA non-coding upstream 262919 23895529 ~ 23913499 (+)
XLOC_003430 NA non-coding upstream 578747 23594349 ~ 23597671 (+)
XLOC_003463 NA non-coding downstream 881811 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 1004206 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 1079161 25256812 ~ 25266235 (+)

Expression


Co-expression Network