G1514076 (LOC106574979)


Basic Information

Item Value
gene id G1514076
gene name LOC106574979
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 8057020 ~ 8059530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1732608
AGGGaaatgaggagagagaagattCACAAGGAGAGTATGTCTGGCTTCATCTGGTACAGACTTTAATAACTGTGAAAACCCCTCCGTTAGAGGGCAGGGCAGAAAAGAAGCGGTGAAATGAGTggacaggcagaaagacagacagactgaaagacagactggaagacagagagacagacagacatctagtGCTGGTAGTTTCAGGTACAGGTGAGAATGACAGGTGACTCTCAAGAGGAGTTCAATTTAGCGGAATGTCATTTTGATCACcttaaccctctgttcctctgcTGGATCAGGTAGTTCAGCCACGCTCCTCTCAATGTCGTCCAGCCACTGAAGAAGGTCATCAGTCTTCCTACGGTACTGATACCACTGGGGGGCTATCGCCAGggccttcctcctcctcacaccTCGCaggtcCATGACACTGTTGTATTTAGTGTTGAGCTGATTATGTTTGATTCTGATCTGTTCTTTCTTGTCCAGGTCTGGAACTCTCCTCTGTAGCTTCTGTCCTTTCAGCAACAACTCCTTCACTGCCCCCTCCTCACAGTTCCCGTCCTGTCCTGTGAAATCTTCCTCCTTGAggttctctccctgtttctcttcttcctccAGCAGGTCCAGCCAGATCTTAGCTTCACTGTGGAACTGCTCCACCTCCACCGCTGATGCtgctgcctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacagacacacagacacacagaca

Function

NR:

description
PREDICTED: dystrophin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1732608 True 789 lncRNA 0.50 4 8057020 8059530

Neighbor

gene id symbol gene type direction distance location
LOC118941084 NA coding upstream 93940 7961999 ~ 7965688 (+)
spag17 spag17 coding upstream 110210 7891187 ~ 7946810 (+)
LOC110516423 LOC106574939 coding upstream 168316 7801623 ~ 7888704 (+)
LOC110511355 LOC106592813 coding upstream 259808 7758036 ~ 7801058 (+)
LOC110511354 LOC106575893 coding upstream 303296 7742795 ~ 7753724 (+)
LOC118941085 LOC106575914 coding downstream 409869 8469399 ~ 8472672 (+)
LOC110528836 chsta coding downstream 415522 8475052 ~ 8479361 (+)
LOC110528849 LOC105022557 coding downstream 438822 8498352 ~ 8506254 (+)
LOC118936321 LOC106575888 coding downstream 446609 8506139 ~ 8511196 (+)
LOC110495394 LOC106574832 coding downstream 564721 8623967 ~ 8676626 (+)
G1514075 NA non-coding upstream 303 8056372 ~ 8056717 (+)
G1514070 NA non-coding upstream 4225 8052462 ~ 8052795 (+)
G1514068 NA non-coding upstream 7441 8049349 ~ 8049579 (+)
G1514066 NA non-coding upstream 8957 8047488 ~ 8048063 (+)
G1514065 NA non-coding upstream 9814 8046700 ~ 8047206 (+)
G1514080 LOC106594251 non-coding downstream 4321 8063851 ~ 8069456 (+)
G1514093 NA non-coding downstream 38653 8098183 ~ 8099050 (+)
G1514096 NA non-coding downstream 46601 8106131 ~ 8108540 (+)
G1514125 NA non-coding downstream 137022 8196552 ~ 8197158 (+)
G1514135 NA non-coding downstream 161063 8220593 ~ 8221079 (+)
G1514045 LOC106574979 other upstream 41990 8013860 ~ 8015030 (+)
G1513922 NA other upstream 435079 7620296 ~ 7621941 (+)
G1513874 NA other upstream 630049 7426583 ~ 7426971 (+)
LOC110513752 LOC106575969 other upstream 959860 7032578 ~ 7102239 (+)
G1514180 NA other downstream 287697 8347227 ~ 8412799 (+)
G1514274 NA other downstream 516963 8576493 ~ 8576825 (+)
LOC110495395 LOC106574852 other downstream 618918 8677497 ~ 8682383 (+)

Expression


Co-expression Network