G1515076 (LOC106575847)


Basic Information

Item Value
gene id G1515076
gene name LOC106575847
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9138988 ~ 9140844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1734001
CATTTCAGAGAGATATGATTTTCTCCAGGTATCCCTTATTATAAATACCTTACAGTCCCTTAGtagtcaaaaaatatatatccacCCAAACAAAAGGTGAAAACTGATcctcacaccatctctatctgatacatgttgtgtctaccagcttaTTCCCACATAAAACTGATCCTCACaacatctctatctgatacatgttgtgtctactagcttattcccacagaaaactgatcctCTTTACAGTAGAAGCTAACAAAACACACCAAAACTGACAAGGTGTACACTGATTAGTAAAGAGAGGCTAACATTCTGTAATTCGCCATTTCCTCTGCACAGTTCTCACAGTGAGAAACAATAGGATCCAATTCAGTGTTACCACTTACTTTATGACATGAGAATTAAGTGATGGACTTTAACCTTAGCTGGTCTGAGAGAACTGATGAGGCTTTTCTCCTTTATGTATGCGTTGGTGTTTCTTTAAGCTGCTGTGTTGAGAGAAAtttttcccacagtcagagcaagagtaaggcttctctcctgtgtgtattcgcttGTGACTATTTAACTTATCCAATTGGGAAAAACTCTTTTCACAGTctgagcaggagtaaggcttttctcctgtatgTGAACGTTGGTGTCTTTTTAAGTTACTctgttgagagaaactcttcccacagtcagagcaggagtaaggcttttctcctgtatgtatacgttcatgtttGATTAAGGTATCCAATAgggagaaactcttcccacagtcagagcagaagtaaggattctctcctgtgtgtgttctccggTGAACTGTTAGCTCAtatgatgttgtgaagcattttacacagtcagagcaagagtaaggcttctctcctgtgtgtatatgtTGGTGGTTTTTTAAGTTTCTCCGTTGAGAGAATCTGCACCCACAGTCAGAGcaagagtaaggcttctctccagtgtgcacGCTCTGATGAACTGTCAGAGCCCCTGATGTTCTaaagctcttcccacagtcagagcaggagtaaggcttctctcccgtaTGAATACGTTGGTGTGTTTGTAAGCTTCCCagttgagagaaactcttcccacagtcagagcaagagtaaggcttctctcctgtgtgcatACGCTGGTGAGATTTTAAGGTATTAAATTGGGCGAAACaattcccacagtcagagcagaagtaagacttttctcctgtgtgtattagTTGGTGCCTATTTAACTTATCCAATCGGGAGAAACTCTTTTCACAGTcggagcaggagtaaggcttctctcctgtgtgcactCTCTGATGAACTGTCAGAGCCCTTGATGTtgtgaaactctttccacagtcggAGCAGGGGAAAGACTTCAATCCCGTGTGCCATCTCTGATGAACTGTCAGAGCCCTTGATGTtgtgaagctcttcccacagt

Function

NR:

description
zinc finger protein 665-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1734001 True 1437 lncRNA 0.42 2 9138988 9140844

Neighbor

gene id symbol gene type direction distance location
LOC110523347 LOC106595274 coding upstream 10330 9115618 ~ 9128658 (+)
LOC118941059 LOC106595274 coding upstream 27505 9108236 ~ 9111483 (+)
LOC118941086 LOC106575849 coding upstream 38502 9094895 ~ 9100486 (+)
LOC110527296 LOC106575803 coding upstream 108326 9023116 ~ 9030662 (+)
LOC110496974 LOC106574764 coding upstream 170202 8950376 ~ 8968786 (+)
LOC110497024 dnpep coding downstream 105983 9246827 ~ 9255405 (+)
LOC110495547 ptprn coding downstream 115730 9256574 ~ 9299643 (+)
LOC110495570 LOC106573853 coding downstream 360664 9501508 ~ 9550995 (+)
LOC110527259 LOC106575807 coding downstream 601260 9742104 ~ 9765236 (+)
LOC110527263 LOC106598167 coding downstream 702721 9843565 ~ 9845412 (+)
G1515058 NA non-coding upstream 22137 9097723 ~ 9116851 (+)
G1515044 NA non-coding upstream 57620 9080780 ~ 9081368 (+)
G1515006 NA non-coding upstream 134874 9003208 ~ 9004114 (+)
G1514998 NA non-coding upstream 148204 8989653 ~ 8990784 (+)
G1514996 NA non-coding upstream 151334 8985179 ~ 8987654 (+)
G1515093 NA non-coding downstream 28132 9168976 ~ 9196410 (+)
G1515098 NA non-coding downstream 36806 9177650 ~ 9178516 (+)
G1515109 LOC106575840 non-coding downstream 71732 9212576 ~ 9229128 (+)
G1515110 LOC106575840 non-coding downstream 77417 9218261 ~ 9223736 (+)
G1515005 cbs other upstream 135862 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 458778 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 462477 8623967 ~ 8676626 (+)
G1514274 NA other upstream 562163 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 634652 8498352 ~ 8506254 (+)
G1515776 NA other downstream 833684 9974528 ~ 9975306 (+)
G1515853 NA other downstream 1029258 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1178466 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1875921 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1945241 10978682 ~ 11092554 (+)

Expression


Co-expression Network