G1515109 (LOC106575840)


Basic Information

Item Value
gene id G1515109
gene name LOC106575840
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9212576 ~ 9229128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1734042
CTCTagtgaaagtgaaagtgaaagtaaaCACAGAACAGTATCAGGAAAACACCGGAGAACACAGTATCAGGAAAACACCGTTGCAAGGTCGGAGCTCGACACAGCCCAAGATGACTAAAAGGGAAAtgattaggaacactggaatggcaACCGCCCACGGGGATGTCTTCTTGTCATCTGGAAGGTGAAACATGAAATTCCAGTGAGCATGTGTTTGGAGAGACAGCATTTACTCCGAAGAGAAAAACAAGGAATTTTACACCCTTCCTTTTTAATGCATTCAGTTTGAATAACATGTTCTGTCCCATCTATCCAATCATATCATCCATCACGTAGCATCCCTGAGGATCTGGAAACTACCCAGAATTCAACACAACACTTGACTACAGTGTGATTTTAAAAAGGGAGTGACTCGTGATGCTTTGCCATGGTGGTCAATATTAAACCCAACTGGTGAGATAAGATTACTAACAGCACTAATAGCATCACAACATTAGCCTCTTGGAACCAGCCTGAAATCGCTGCGTTCTGTTTTCAGGAAACAGAATGTTGCACTATTGCACGATGATGCTGGTCACAAGGCTATCACAACATGCCCCTGGGGATGATGTAGCCTGTTAAATAGAATGCCAAATTCATGTatccaaatgtaaatgtttaCTATTAACATCAAGAATTTGGCAAACTATTTataaggctagggatgatgtTGTTTTCACAATGTTTTCAAGTTGGACCATTCTGACACGCTAAAAGAGTATGGTTTAGAAGTATATGACACGTCAACATTACGTACCCTcttcaacctccctctctccagggaGAATAGGAAGCAGGACCCGCTCGTGTCTCTGTGTCCTCATCCCATTGTTTACGATACAGTCCACGTATCCCCCGGAGCCTGGCAACAGTTGGAGGGTGATGTTGCTATTGGCTGTGACAGTTTGGTCTGTGTTAATGACAGTCCAGTTGTTAGGTGTCTTTATGAGTGCTGCAGCAGATAAGTTCCATTGGATCCAAGGTGCTGGTTTACCCGTGGCAGAGCAGCTGACCACAACTTCCATGTCTGCTTTAGGTTCAGTGCTGGGGACTTTTTGCATTGTGGCTCTCACTTCAGATAAACCTTtgaatagatgaaacagggaatATTAGATCATGTTGATTTTATTTATATGACTTATTTTACCAGACAGATCAATTAAGAATAGCTTTCAAAATATGTATCatgttttcataaatgttttgACACCAGCAAATGTCCCTTATTAATGCAGCAGAGTTCATGGTCGTTCAGACAGTTTTGGGATTCAGACAGTTTTGGGAAATCCTGCCAGTGATGTAACAATGCCAATATGTTGATTTTATAGTTGAAGTTAGCTGGTGTTCTAAACTATAGTGTTTCTATTCCCCTAATAAAACCCCTAATAAACTGCCCATACTGTATTATTCAGATATCATTCCTTCGCAAATGTCCTGCTGTAAAGGCTGACTAAAGGATTATTCTATATTTAGCGAAGCACCAGATGTAAGGACCTTTATATTACATGTATTGGGGGTTTTGCTTATAAATGTATTAGTTTAGCATCTACAGtacattcgtaaagtattcaaacctcttccatttatccACATTTAGTTAccttacaggcttattctaaaatgtatgaaataaatacaaattcctcatcaatctacacacaataccccataatgacaaagcaaaaacatgtttagacatttttgcaaatcatTAAAAAAAGAAAACTTTTACTACatttgaggctgtaatgtaacaaaatgtgaaaaaagtcaaggggtctgaatactttccgaattaacTGTATGTATTGCTTATGAAGTCTTTATGAATGCTCGATAAGAGTGTTTCCCCCAAAAATATAATCTCCAAGGATACCCCCAGTGACTTCCACTTCTATaccagcacacctgattcaactaggtCTAATCAAGGGCTGAATAATTAGTTGACCAGGTGTGCTTGTACCTGTGCTGACCTACGATTATTATTTTGAGTTACAATATCACTTACATTAAAATGTTGTAACTTCAACTGAATAGAGAACAATAGAGGTACGCCCTAAAACTGTTATTATTCAGTGCATTAAATACCTTGAACGGTAAGACACGTCTGCTTGCGTCTTGATCCACTCGGGTAAACATTGAAGGAACAAATATAGCAGGCTTCGTCTGCCCATGTTACGTTCTTCACGGTAATAGACGTCGAGTTGAGAGATGCCTCCGTGAAAACCACCTTGCCTCGGTGCGGGTCTATGATTTGAGCTCCAAACCGCTTGCTGTAGGTGGCCAGATTCTCCACCGAGTCGTCTTTGAACAGCCTCTGCCAGGTGACTTGCAGCACACCTGTCGGGTCCGCATGGGTGCAGGTATATGATGCGTCGGCATTGAAGTCAACCCTGGTGTCTCCTCTAGCTACGACGTTGACAGAGACCGCTACAAAAGGAA
>TU1734041
GAACGGTAAGACACGTCTGCTTGCGTCTTGATCCACTCGGGTAAACATTGAAGGAACAAATATAGCAGGCTTCGTCTGCCCATGTTACGTTCTTCACGGTAATAGACGTCGAGTTGAGAGATGCTTCCGTGAAAACCACCTTGCCTCGGTGCGGGTCTATGATTTGAGCTCCAAACCGCTTGCTGTAGGTGGCCAGATTCTCCACCGAGTCGTCTTTGAACAGCCTCTGCCAGGTGACTTGCAGCACACCTGTCGGGTCCGCATGAGTGCAGGTATATGATGCGTCGGCATTGAAGTCAACCCTGGTGTCTCCTCTAGCTACGACGTTGACAGAGACCGCTACAAAAGGAA

Function

NR:

description
OX-2 membrane glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1734042 False 2484 lncRNA 0.41 3 9212576 9229128
TU1734041 True 351 lncRNA 0.52 2 9223381 9229128

Neighbor

gene id symbol gene type direction distance location
LOC100653484 LOC106573841 coding upstream 52569 9134562 ~ 9160007 (+)
LOC110523347 LOC106595274 coding upstream 83918 9115618 ~ 9128658 (+)
LOC118941059 LOC106595274 coding upstream 101093 9108236 ~ 9111483 (+)
LOC118941086 LOC106575849 coding upstream 112090 9094895 ~ 9100486 (+)
LOC110527296 LOC106575803 coding upstream 181914 9023116 ~ 9030662 (+)
LOC110497024 dnpep coding downstream 17699 9246827 ~ 9255405 (+)
LOC110495547 ptprn coding downstream 27446 9256574 ~ 9299643 (+)
LOC110495570 LOC106573853 coding downstream 272380 9501508 ~ 9550995 (+)
LOC110527259 LOC106575807 coding downstream 512976 9742104 ~ 9765236 (+)
LOC110527263 LOC106598167 coding downstream 614437 9843565 ~ 9845412 (+)
G1515093 NA non-coding upstream 16166 9168976 ~ 9196410 (+)
G1515098 NA non-coding upstream 34060 9177650 ~ 9178516 (+)
G1515076 LOC106575847 non-coding upstream 71732 9138988 ~ 9140844 (+)
G1515058 NA non-coding upstream 95725 9097723 ~ 9116851 (+)
G1515044 NA non-coding upstream 131208 9080780 ~ 9081368 (+)
G1515266 LOC106598125 non-coding downstream 72598 9301726 ~ 9311147 (+)
G1515270 NA non-coding downstream 84335 9313463 ~ 9315447 (+)
G1515296 NA non-coding downstream 90157 9319285 ~ 9319732 (+)
G1515274 NA non-coding downstream 140312 9369440 ~ 9369739 (+)
G1515005 cbs other upstream 209450 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 532366 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 536065 8623967 ~ 8676626 (+)
G1514274 NA other upstream 635751 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 708240 8498352 ~ 8506254 (+)
G1515776 NA other downstream 745400 9974528 ~ 9975306 (+)
G1515853 NA other downstream 940974 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1090182 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1787637 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1856957 10978682 ~ 11092554 (+)

Expression


Co-expression Network