G1515266 (LOC106598125)


Basic Information

Item Value
gene id G1515266
gene name LOC106598125
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9301726 ~ 9311147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1734270
ctttcacaTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACACCCTTTAGTACTCCTCTCCTTCTTCATCCTCGTCCCCTACACTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCACATACCAGTGCACAAAGGCTCTCTTGGCGTACATCAGGTCAAACTTGTGGTCAAGCCTGGCCCAGGCCTCAGCGATGGCGGTGGTATTGCTCAGCATACACACAGCTCTCTGGACCTTGGCCAGATCTCCTCCAGGGACCACTGTGGGTGGCTGGTAGTTGATACCGACCTTGAAGCCAGTGGGACACCAGTCTACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCTTTCGGCACAACATCACCACGGTAGAGCAGGCAGCAGGCCATGTACTTGCCGTGACGTGGGTCACATTTCACCATCTGATTGGCTGGCTCAAAGCAGGCGTTGGTGATCTCAGCCACTGATAGCATCTCGTGATAGGCCTTCTCAGCAGAGATGACTGGAGCATAGGTGGCCAGAGGGAAGTGGATACGGGGGTAGGGCACCAAGTtggtctggaactctgtcaggtccacattgaGAGCTCCATCAAAACGCAGGGAGGCGGTGATGGAGGAGACgatctgaccaatcagcctgttgaGGTTGGTGTAGGTGGGGCGCTCAATGTCCAGGTTCCTGCGGCAGATATCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTGGTCAGGATGGAGTTATAAGGCTCCACCACAGCAGTGGACACCTGGGGAGCTGGATAGATGGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACGGAGAGACGTTCCATCAGCAGAGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGCCTGTAAGAAACAGAAGGTAGACATGTAATACATGTATTTATTAGTGATGGGCACTGGTATGTAAAATCATTATCCATATCAGTTGAACTTTTCCGAACCGATATCATATTAGTTTGAATGAATAACATTGCAACTGTGTGGAATACATTTCCACGGCTTTGTGAAGTTCAGACAACTGCTCGCTGGTTGCCTATTGGGCCAGGTGTGAATGTCCAGGGGGCCTAATCAACCTACACAACCAGTTTGAATACAATGTTGaagtctcctctccaccccacttattagatttttttatttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgactgcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgactttgtcagctcggggattcgatcttgcaacctttcagttacgagtccaacattctaaccactgggctacctgcctgtcatcctcattgaaagcaagtctaagaagtggtagatctgttctatgtgcactatttctatgcctccagttcttaagtttCAGTTTTTGCGTCTTACGGTTTTGAAAAAAGGCGTCAAACAGCTGGTTATTGAACATGTATTTCAtggcggtttagatggtacattgATTGTCACATAAACTGATATTAGGCAAACTGTtctttgcaaccaggaaatgacagagCGATTTCTGTATATTGCACCTTTaataacaaaaggcacatctcaataggtggtccaggtatcCTCATGACCTGGCACAAGTGGGGTGGTGGTGCTTTCCTCGTTTGTTCTCTATTGTTCCCGCAAGCATGGGGGGGATATCAGAGGGCACCATCAAACCAACTCTTTGAGTGGCCTGTTCCATTAAGTTTTGcacttgttttaaaaaaaacaacacttaTTTTGCTCCAAAATAATGTTTTACCCTCAAGTGTGTGTACATTACCGTATTTATACGTGGGATGTTTTACAACAGAGAAAGTTCTCAAATAGCATACTCAGAAGCACTCCAGCTAAGTTGAACCTGTGAGCGGGTTTTGTGTCTGTAGCAATAGTCATGTATGCCCTTTTACATAATAATCTAGGTTcagccattataaactgggtggttcgagccctgaatgctgattggctgacagacatagtatatcagaccgtataccagaggtatgacaaaacatttatttttactgctctaattatgttggtagtcagtttacaatagcaataaggcacccggGGGTTTgggatatatggccaatataccacggctaagggctgtgtccaggcactccgcgttgcgtcgtgcagaTGAACAGctcttagtcgtggtatattggc
>TU1734278
ctttcacaTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACACCCTTTAGTACTCCTCTCCTTCTTCATcctcgtcCCCTACACTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCA
>TU1734282
ctttcacaTTTTATTCAAAATGGCTGATGTGAGGCAGGAAGGTTCTTCTTGTAGCTGGGTGGAATGTGCTTACTCTATGGAATGATTTCCAATATTAGTCCGTTAAACCTTTTTGTTGTTTTCTTACTACTTGCACTATCcgggactggtagactatattaatGTAACATCAGCAGATCAGGAGTTACACCCTTTAGTACTCCTCTCCTTCTTCATCCTCGTCCCCTACACTGTCAGTACCCACCTCTTCATAATCCTTCTCCAGGGCTGCCATGTCTTCTCTGGCCTCTGAGAACTCTCCCTCCTCCATGCCCTCTCCCA
>TU1734275
TCATAGATGGCCTCATTGTCCACCATGAAGGCACAGTCCGAGTGCTCCAGGGTGGTGTGGGTAGTCAGAATGGAGTTGTAAGGCTCCACCACAGCAGTAGAAACTTGGGGAGCAGGGTAAACAGCAAACTCAAGCTTGGACTTCTTCCCATAGTCGACAGAGAGACGTTCCATCAGCAGGGAGGTGAACCCAGAGCCGGTGCCTCCTCCAAAGCTGTGGAAGATCAGGAAGCCCTGGAGACCAGTGCACTGGTCAGCCTGTAAGAAACAGAAGGTAGACATGTAATACATGTATTTATTAGTGATGGGCACTGGTATGTAAAATCATTATCCATATCAGTTGAACTTTTCCGAACCGATATCATATTAGTTTGAATGAATAACATTGCAACTGTGTGGAATACATTTCCACGGCTTTGTGAAGTTCAGACAACTGCTCGCTGGTTGCCTATTGGGCCAGGTGTGAATGTCCAGGGGGCCTAATCAACCTACACAACCAGTTTGAATACAATGTTGaagtctcctctccaccccacttattagatttttttatttattttacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgactgcctaggaacagtgggttaactgccttgttcaggggcagaacgacagatttgactttgtcagctcggggattcgatcttgcaacctttcagttacgagtccaacattctaaccactgggctacctgcctgtcatcctcattgaaagcaagtctaagaagtggtagatctgttctatgtgcactatttctatgcctccagttcttaagtttCAGTTTTTGCGTCTTACGGTTTTGAAAAAAGGCGTCAAACAGCTGGTTATTGAACATGTATTTCAtggcggtttagatggtacattgATTGTCACATAAACTGATATTAGGCAAACTGTtctttgcaaccaggaaatgacagagCGATTTCTGTATATTGCACCTTTaataacaaaaggcacatctcaataggtggtccaggtatcCTCATGACCTGGCACAAGTGGGGTGGTGGTGCTTTCCTCGTTTGTTCTCTATTGTTCCCGCAAGCATGGGGGGGATATCAGAGGGCACCATCAAACCAACTCTTTGAGTGGCCTGTTCCATTAAGTTTTGcacttgttttaaaaaaaacaacacttaTTTTGCTCCAAAATAATGTTTTACCCTCAAGTGTGTGTACATTACCGTATTTATACGTGGGATGTTTTACAACAGAGAAAGTTCTCAAATAGCATACTCAGAAGCACTCCAGCTAAGTTGAACCTGTGAGCGGGTTTTGTGTCTGTAGCAATAGTCATGTATGCCCTTTTACATAATAATCTAGGTTcagccattataaactgggtggttcgagccctgaatgctgattggctgacagacatagtatatcagaccgtataccagaggtatgacaaaacatttatttttactgctctaattatgttggtagtcagtttacaatagcaataaggcacccggGGGTTTgggatatatggccaatataccacggctaagggctgtgtccaggcactccgcgttgcgtcgtgcagaTGAACAGctcttagtcgtggtatattggc

Function

NR:

description
hypothetical protein Z043_123806, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1734270 False 2540 lncRNA 0.47 2 9301726 9311147
TU1734278 False 321 lncRNA 0.45 2 9301726 9308928
TU1734282 False 321 lncRNA 0.45 2 9301726 9308928
TU1734275 True 1626 lncRNA 0.43 2 9306210 9311147

Neighbor

gene id symbol gene type direction distance location
LOC110495547 ptprn coding upstream 2083 9256574 ~ 9299643 (+)
LOC110497024 dnpep coding upstream 46321 9246827 ~ 9255405 (+)
LOC100653484 LOC106573841 coding upstream 141719 9134562 ~ 9160007 (+)
LOC110523347 LOC106595274 coding upstream 173068 9115618 ~ 9128658 (+)
LOC118941059 LOC106595274 coding upstream 190243 9108236 ~ 9111483 (+)
LOC110495570 LOC106573853 coding downstream 190361 9501508 ~ 9550995 (+)
LOC110527259 LOC106575807 coding downstream 430957 9742104 ~ 9765236 (+)
LOC110527263 LOC106598167 coding downstream 532418 9843565 ~ 9845412 (+)
LOC110527266 LOC106595105 coding downstream 540306 9851453 ~ 9854072 (+)
LOC110497036 LOC106575870 coding downstream 545704 9856851 ~ 9859254 (+)
G1515109 LOC106575840 non-coding upstream 72598 9212576 ~ 9229128 (+)
G1515110 LOC106575840 non-coding upstream 77990 9218261 ~ 9223736 (+)
G1515093 NA non-coding upstream 105316 9168976 ~ 9196410 (+)
G1515098 NA non-coding upstream 123210 9177650 ~ 9178516 (+)
G1515270 NA non-coding downstream 2316 9313463 ~ 9315447 (+)
G1515296 NA non-coding downstream 8138 9319285 ~ 9319732 (+)
G1515274 NA non-coding downstream 58293 9369440 ~ 9369739 (+)
G1515432 NA non-coding downstream 175720 9486867 ~ 9488511 (+)
G1515444 NA non-coding downstream 199630 9510777 ~ 9511834 (+)
G1515005 cbs other upstream 298600 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 621516 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 625215 8623967 ~ 8676626 (+)
G1514274 NA other upstream 724901 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 797390 8498352 ~ 8506254 (+)
G1515776 NA other downstream 663381 9974528 ~ 9975306 (+)
G1515853 NA other downstream 858955 10170102 ~ 10171956 (+)
G1516136 NA other downstream 1008163 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1705618 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1774938 10978682 ~ 11092554 (+)

Expression


Co-expression Network