G1515536 (LOC106575804)


Basic Information

Item Value
gene id G1515536
gene name LOC106575804
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9631612 ~ 9631832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1734655
CGTTGAGCCATTTGGAgttgtactgggctgttcgcagcGGCGGCATGTTACCAAGGCTACGGTAGATGACGGGGTCACGACCCGAGAAGTCGATGACAGTGGCGGCGTAGAGTTCGCCCTTCTCTGTTACCATGGCAGTGGAGTTGTGACGCGGGTCGTAGGGGCATCTCGCCACCCCGTTCACCGTGTCCATCACCCGACTGATGTTTCCTATCTGGAAG

Function

NR:

description
semaphorin-5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1734655 True 221 lncRNA 0.58 1 9631612 9631832

Neighbor

gene id symbol gene type direction distance location
LOC110495570 LOC106573853 coding upstream 80617 9501508 ~ 9550995 (+)
LOC110495547 ptprn coding upstream 331969 9256574 ~ 9299643 (+)
LOC110497024 dnpep coding upstream 376207 9246827 ~ 9255405 (+)
LOC100653484 LOC106573841 coding upstream 471605 9134562 ~ 9160007 (+)
LOC110523347 LOC106595274 coding upstream 502954 9115618 ~ 9128658 (+)
LOC110527259 LOC106575807 coding downstream 110272 9742104 ~ 9765236 (+)
LOC110527263 LOC106598167 coding downstream 211733 9843565 ~ 9845412 (+)
LOC110527266 LOC106595105 coding downstream 219621 9851453 ~ 9854072 (+)
LOC110497036 LOC106575870 coding downstream 225019 9856851 ~ 9859254 (+)
LOC110495578 LOC106575871 coding downstream 231550 9863382 ~ 9864362 (+)
G1515492 NA non-coding upstream 60021 9571354 ~ 9571591 (+)
G1515445 NA non-coding upstream 114105 9514364 ~ 9517507 (+)
G1515444 NA non-coding upstream 119778 9510777 ~ 9511834 (+)
G1515432 NA non-coding upstream 143101 9486867 ~ 9488511 (+)
G1515274 NA non-coding upstream 261873 9369440 ~ 9369739 (+)
G1515538 NA non-coding downstream 2771 9634603 ~ 9634819 (+)
G1515543 NA non-coding downstream 11910 9643742 ~ 9644594 (+)
G1515546 NA non-coding downstream 18424 9650256 ~ 9650471 (+)
G1515550 NA non-coding downstream 24525 9656357 ~ 9656586 (+)
G1515551 NA non-coding downstream 27901 9659733 ~ 9659936 (+)
G1515005 cbs other upstream 628486 9000398 ~ 9003126 (+)
LOC110495395 LOC106574852 other upstream 951402 8677497 ~ 8682383 (+)
LOC110495394 LOC106574832 other upstream 955101 8623967 ~ 8676626 (+)
G1514274 NA other upstream 1054787 8576493 ~ 8576825 (+)
LOC110528849 LOC105022557 other upstream 1127276 8498352 ~ 8506254 (+)
G1515776 NA other downstream 342696 9974528 ~ 9975306 (+)
G1515853 NA other downstream 538270 10170102 ~ 10171956 (+)
G1516136 NA other downstream 687478 10310107 ~ 10327138 (+)
G1516637 NA other downstream 1384933 11016765 ~ 11017089 (+)
LOC118941092 LOC106575823 other downstream 1454253 10978682 ~ 11092554 (+)

Expression


Co-expression Network