G1515880 (LOC102777708)


Basic Information

Item Value
gene id G1515880
gene name LOC102777708
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 9761473 ~ 9765225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735073
CGACTCTTTTATTTTGTAAAAGAAAACTTTTTAAGTTACTTCTAGCTTCGCCTTTGACACAATCATCTCGCGTTTCACATGATTTTATTTTCATTCGTTTTAATAAATTAAAATGGTACATTATGCATGCAATACCGCATTAGCCGTTGAGTTGTTCGTCTTCCACAAAAAGTATCAACACAAAATGTCCTTAAAGAGTTCTGATGAAGCTGCTTGGAAAAGGACCGTTGGAGAATTAGTCACAGCATGAAGCGATGTACATGGTTGTGGTTGCATAGTACATGGAATTTCCTCATTTTAAAACAGCATGCTTTTTGTATTGCACATTACTGAAACTTTAGTATACTGACATTTCTGTAGACTGAAACGTTTTGTTGTTCCAAGTTGTCCCGTCGAGGACCGTAGTTTCTTAATGAGAATGCAAGTATACAGCAAATAGCATCTCTCAAAGACATTatgtacatgtatttatttattataaaaaTAATCACCAGCAAAGATGTTTCTTTTACTTTTTCCTATATTGAGATACATTTTtgattttttcttattttttgtacatttttaccaaagaaaaaaacatttaactgTTTTAAATGGTCTGGTTGAGTTTAAACCCATGTTATTTCATCAAATAAGGAGAATTGTAATTCAACTTAATTTAGAGGCAAAAATGTAGCCTCTTCATTTCTTACAAGAAGACAAAAGAAGAGTACAGGACACGTGCTTTTTTTTTCTCAGATCAGTAACAGAGACCTTTAGAAATTATATCTACACCATTCAAAGAACAAATGTTTTCTTTCCAGGGCATTCataggaaaaagagagaggtaaATTTTcatttccagtcaattcagaaaatcTATTGGAATTCAGTTAATTAATTGTTAATAGAAAAGGAGATCCCCCCCAATGTTTCAAAAAGGGCTAAGACATGCTACACCCAGTAGCAGTAACCCGACCTTAAGTTACCAAACCCTCACAGACTGGTCTGGGGACTCTGGTGGGACAGAGGTCAATGGGCTAGAAAATCCCTCTGATTGTCTCAAGCAACAGAGCTGAATCTTAGTTCTGGTTCTTGGTTCTGGTTTTTAATGGACAGTGAATAACTCCCCATTCAATCAGCCAACACTCCCTTTGGCCTGAATCACAATATGACAGAGAAGCATGCTCATAAACAACAGCAGATGTACTTGTATTATTTTTTCTTCTTCGTTTTACAGTCTATTGTTTTCAGTCAGTGAACAAACTAGCATAAGAGACATAGATATGAGCAAGGAAATCAACTGGCTCTAGAATGTTAAGGCACCACCTGCCGCGGGTGCTACAAATGTCACTACAGTACCTTCGACTCTATTGGAGGGAATTACACTAAAAGACAGCTATAACAAGTTAACTCTGCACATCTCTCTAACAATGTCTCAGAATACGCTGCCCCAAGAACTCACTCTCCCAGGATGCACAGCGAGGGGCCACCATCTCCATCATGGTCAAAGCTCCAGTTTAGATGACCTATCCACCGCAGGgaaaaccctggtcctggagggtGGTTGTGTCTCTGTGACCGACCGGGTTCGAACCCGGGCCTCCTGCACGCCAGAAGTGTCTATTTGCCCACTAAactaaagcctaggcattggaTCGGCGAGCCAATGCAACTAGTCACCGAACCCCCTTGGGTACAACTGCATGCTTCTCATCTCAACAAAAACTCCAAAAACCCACAATTACTGAAGAAAAATTGTTGCTAGAAATAAACTAaccaaattaatttcttccattTCCATGTTCATCTATTTAAATACCCCCAAAAAGTTCAGATAATCCACTCTCAAGTAATTAGACTGCACCTATTTTGCACCAATGTGTGCTCTCTCTCGTTACACACCCTCTATTTTACACAGGGATATTCCTACCAAAGGGAGCATTACTTTTTCAAGTCAGGGAAAACATGCCAGCTACACAGAGAATCAATGATCATGATGCAAAGGACCCTGGGAAGACACAATCCAACGTTAGTGGAGCAGCATGGACGGTCATCCAATCACGAGGCTGGCCAGAGAGAAACACAGGAAGTAGCATGGACGGTCAACCAATCACGAGGCTGGCCAGAGAGAAACACAGGAAGCAGCATGGACGGTCAACCAATCACGAGGCTGGCCAGAGATGAGGCGAACTCTGattgtttgacacccctgcttctTGTTATAATACCTCTACGAGTCTCTGACACAACCGAATCAGAGCAGCGAAAAATACTGAGATATGCAAAGTATCGACTGTTGCCGAAGAAAGGCCAAGCTAGACAGGTGTTCAAATGGCACATTCAGTATCTGACATGTGAAAGCACTTGTTAACAAAACAACCAAATACTCCACATGCTCCTCTCAGGAATCAGTAAAGGTCTGGAAAAATACCACTGCCAGTCATGGTGGGGCAGGTCTATTATACAACTccccatgacaacagacatgtaCTGTAAGTGAATATATTGACGATACTAGCGAAACTCTCTCAGTCAGCATGCAAACAACTGAACGGTCTGGGGACTTTCAGCAGTGACTCCACCACTTGCTATGGCgactcatggggggggggggggggggggggggtacacatgTACCCACAATCTAACCATGCTAGCTAAAatagcttagcttgttgttagcTTAGCAAAGTCCAAATCTCAATCTCATACTGCTTTCCTCTTCCACTCATCTCTTTGTTTGGGGAACACAGGAACTAGGAAAGTCCCCTTGTGAGGGAAAGCAACTCAGTCATATGAGTTGTATTAACTCAGTTATGTAGCATTAGCATCATGTCCTTCTTCCTCATCCTGACCACATTGCTTAACAGGGGTCCCTGCCAGTGCCAAGGCAAGACTGAGAGACAGAATGGGAATGAGAGGTGATTGGAGGTTTTGTTCAGGAGGGAAGTAAAACAAATAATCGAAAACAACAGAATTGGACACAATATTTTGAACGGGAACCATTTTGACTCTGTTGCCACCAGAGAGTTGACTTGAGGCCTATAAGGGTTGTGAAGCTGGGACGTCATTCGGGCTCAAAGCCTGTGCCGGGAGTCGTGGCTGTAGCTACCCGGGGAGGAGCGGTTGCGGTGGGGCTTGTAGGAGTCTTGGTAGGGGTCCTGGTAGTCCTGGTGGTACGGGTCTTGGTCTCGGCTGTGCTGTGAGCCCGACGACATGCGGTTGCGTCCCTTGTGCGCCCGCTCGTTGTGGTAGTTCTCGTCGGCGGTCATCAGGTTGCGACGCTCGTTGGGCGTGGAGTGGTCTCCCGTGTGGTTGCTGTGTTGTCTTATTCTTTGAGTCTGCTGGTTcacctcCTGCAGTCCAGAGATGGTGGTGGGGTAAGGAGTGAGGGCGGTGGGACCCAGGTTGCGTCCCAGCAGGGGGTTGAGCGGCGTGGCCATGGAGGTGTGTGTGGCCTTCCAGTAGGCCTCCAGATACTCAGCCAAGTGTTCACACGCATCCTCCAACTGGTTCTCATCCAGGATGATGTCAAACATCTCCTGttagagggggtgaagagaggg

Function

NR:

description
voltage-dependent L-type calcium channel subunit beta-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735073 True 3552 TUCP 0.44 2 9761473 9765225

Neighbor

gene id symbol gene type direction distance location
LOC110496916 LOC105023165 coding downstream 72740 9586941 ~ 9688733 (-)
LOC110497032 LOC106573854 coding downstream 190898 9551258 ~ 9570575 (-)
LOC110495573 LOC106574919 coding downstream 233170 9526170 ~ 9528303 (-)
LOC110497029 LOC106574920 coding downstream 235494 9520263 ~ 9525979 (-)
LOC110495556 LOC106574923 coding downstream 260233 9486842 ~ 9501240 (-)
LOC110527257 LOC106575805 coding upstream 2396 9767621 ~ 9785107 (-)
LOC110519295 LOC106595629 coding upstream 63016 9828241 ~ 9829247 (-)
LOC118941060 LOC106596684 coding upstream 69027 9834252 ~ 9835816 (-)
LOC110495576 LOC106575864 coding upstream 73344 9838569 ~ 9842785 (-)
LOC110527264 LOC106575865 coding upstream 83253 9848478 ~ 9849459 (-)
G1515875 NA non-coding downstream 13069 9747738 ~ 9748404 (-)
G1515632 NA non-coding downstream 39199 9721764 ~ 9722274 (-)
G1515620 NA non-coding downstream 48744 9712403 ~ 9712729 (-)
G1515618 NA non-coding downstream 51893 9709348 ~ 9709580 (-)
G1515610 NA non-coding downstream 63104 9698170 ~ 9698369 (-)
G1515904 NA non-coding upstream 51581 9816806 ~ 9826743 (-)
G1515911 NA non-coding upstream 72452 9837677 ~ 9837914 (-)
G1515932 NA non-coding upstream 104425 9869650 ~ 9869889 (-)
G1515937 NA non-coding upstream 116561 9881786 ~ 9882092 (-)
LOC110495582 LOC106574807 non-coding upstream 119795 9882795 ~ 9893229 (-)
G1515456 NA other downstream 282255 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 337892 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 367865 9391447 ~ 9402475 (-)
G1515196 LOC106573840 other downstream 549091 9082361 ~ 9212382 (-)
LOC110516308 LOC105023143 other upstream 409634 10174859 ~ 10229881 (-)
G1516062 LOC107575789 other upstream 445093 10210318 ~ 10210833 (-)
G1516107 NA other upstream 493600 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 1088344 10853569 ~ 10856314 (-)
G1516757 NA other upstream 1283180 11048405 ~ 11048928 (-)

Expression


Co-expression Network