G1516039


Basic Information

Item Value
gene id G1516039
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10168026 ~ 10168977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735275
acagGTGTTTGCTGTGCACTCAGTCCTCATCTTCAAGCCCACTCCCATGTCAGCTGTCTGACCACCACATGAACTTTGGATGTTACGTCCCAAATTCGTCTCCCTGAAACATCATTATGCACACACCAGTGTTGATGTATTTCCTGTTTCCAGGTTCCTGTCAGAGACGCATCATGTTTCCTGTTTGTGATCAGAGACACGTCAGTAAGTTAGTAAAAACATTCAAAGAACTACtgaaagagagaaaacatttcCCATTTACTTTGTGTCTGCAGTCGACACGTCATTTTTAACTTGTCTTTGTGCATCAGAACTTGGTTATACAACAATGGCTTTCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTTGGAGTAAATGAAAATGTATTGTACACCATCCTTAGTGAAACAGCACCTTTTTCTACCAGCGCCCCCCACCCATATTCCTAACTgtactctctttctcactccttttcTTTGCTGTACAAAGTGTTTTCAAAATTATTATTTGTATGATGTTAGTATGACAATGTTCTTTATTATGGAAAAAGGAAAGATTTATTTTTGTTACTGGTTTGTTTCATAATTCTTTTTTAAATTGGTATTGTAATATCTCTATGCAAGAACTGTTGAGTGAATCATTTGTATTTAagaatgtaatatgtgtaataAATAGTAGA
>TU1735276
ttgaatggtgtttcctccgacacattgttgcggatgttaaggagcgcggttaggtgggtcatgtttcggaggacaagGATAATATCAAAATTGTAGAGAAAACAGGGAGGTAAAATTAGAAAAATAATGAATCGCCTCACATTCAGTCGGTATAATTCAGCACTACAATTTGTTACGACATTTAAAAGAAAGACAGGCATTTGGATTGTTTTACAGTTGTGGGTAGCATCttgatgtactgtatgacagGTGTTTGCTGTGCACTCAGTCCTCATCTTCAAGCCCACTCCCATGTCAGCTGTCTGACCACCACATGAACTTTGGATGTTACGTCCCAAATTCGTCTCCCTGAAACATCATTATGCACACACCAGTGTTGATGTATTTCCTGTTTCCAGGTTCCTGTCAGAGACGCATCATGTTTCCTGTTTGTGATCAGAGACACGTCAGTAAGTTAGTAAAAACATTCAAAGAACTACtgaaagagagaaaacatttcCCATTTACTTTGTGTCTGCAGTCGACACGTCATTTTTAACTTGTCTTTGTGCATCAGAACTTGGTTATACAACAATGGCTTTCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTTGGAGTAAATGAAAATGTATTGTACACCATCCTTAGTGAAACAGCACCTTTTTCTACCAGCGCCCCCCACCCATATTCCTAACTgtactctctttctcactccttttcTTT
>TU1735277
acagGTGTTTGCTGTGCACTCAGTCCTCATCTTCAAGCCCACTCCCATGTCAGCTGTCTGACCACCACATGAACTTTGGATGTTACGTCCCAAATTCGTCTCCCTGAAACATCATTATGCACACACCAGTGTTGATGTATTTCCTGTTTCCAGGTTCCTGTCAGAGACGCATCATGTTTCCTGTTTGTGATCAGAGACACGTCAGTAAGTTAGTAAAAACATTCAAAGAACTACtgaaagagagaaaacatttcCCATTTACTTTGTGTCTGCAGTCGACACGTCATTTTTAACTTGTCTTTGTGCATCAGAACTTGGTTATACAACAATGGCTTTCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTGGGAGTAAATCACTGCTTTGTGTTGGAGTAAATGAAAATGTATTGTACACCATCCTTAGTGAAACAGCACCTTTTTCTACCAGCGCCCCCCACCCATATTCCTAACTgtactctctttctcactccttttcTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735275 False 707 lncRNA 0.37 1 10168026 10168732
TU1735276 False 751 lncRNA 0.41 1 10168227 10168977
TU1735277 True 506 lncRNA 0.42 1 10168227 10168732

Neighbor

gene id symbol gene type direction distance location
LOC110495586 LOC106574945 coding downstream 9520 10149011 ~ 10158506 (-)
LOC110497041 LOC106574885 coding downstream 21181 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 50254 10074275 ~ 10117772 (-)
LOC110514354 LOC106575825 coding downstream 110607 10000040 ~ 10057419 (-)
LOC100653460 LOC106575875 coding downstream 267308 9893385 ~ 9900718 (-)
LOC110516308 LOC105023143 coding upstream 6514 10174859 ~ 10229881 (-)
LOC110527275 LOC106590732 coding upstream 205794 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 1019815 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 1027120 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 1042342 11211319 ~ 11212299 (-)
G1516046 NA non-coding downstream 1534 10166104 ~ 10166492 (-)
G1516038 NA non-coding downstream 8638 10159169 ~ 10159388 (-)
G1516026 NA non-coding downstream 51279 10116004 ~ 10116747 (-)
G1516024 NA non-coding downstream 54806 10112935 ~ 10113220 (-)
G1516042 NA non-coding upstream 312 10169289 ~ 10169803 (-)
G1516041 NA non-coding upstream 4139 10173116 ~ 10173729 (-)
G1516052 NA non-coding upstream 32998 10201975 ~ 10202251 (-)
G1516053 NA non-coding upstream 34571 10203548 ~ 10203764 (-)
G1516056 NA non-coding upstream 36692 10205669 ~ 10205921 (-)
G1515880 LOC102777708 other downstream 402801 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 674144 9486842 ~ 9501240 (-)
G1515456 NA other downstream 688808 9478676 ~ 9479218 (-)
LOC110495568 nbeal1 other downstream 744445 9403188 ~ 9476861 (-)
LOC118941087 als2cr11 other downstream 774418 9391447 ~ 9402475 (-)
G1516062 LOC107575789 other upstream 41341 10210318 ~ 10210833 (-)
G1516107 NA other upstream 89848 10258825 ~ 10260556 (-)
G1516562 LOC106575810 other upstream 684592 10853569 ~ 10856314 (-)
G1516757 NA other upstream 879428 11048405 ~ 11048928 (-)

Expression


Co-expression Network