G1516080


Basic Information

Item Value
gene id G1516080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10238410 ~ 10239421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735319
tcaaatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatatttagcagatgttattggtcacatacacatatttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatatttagcagatgttattggtcacatacacatatttagcagatgttattggtcacatacacatgtttagcagatgttattggtcacatacacatggttagcagatgttattggtcacatacacatggttagcagatgttattgcgggtgcagctaaatgcttgtgttcctcgctccaacagtgcagtattatctaacaattcacatcaatacacaaatctaaaagtaaaagaatggaattaagaaatatatacatattaggacgagcaatgtcggtgTGGCATTGAGtaaaatatagtagaatag

Function

NR:

description
PREDICTED: filaggrin-2-like isoform X42

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735319 True 1012 lncRNA 0.36 1 10238410 10239421

Neighbor

gene id symbol gene type direction distance location
LOC110516308 LOC105023143 coding downstream 8529 10174859 ~ 10229881 (-)
LOC110495586 LOC106574945 coding downstream 79904 10149011 ~ 10158506 (-)
LOC110497041 LOC106574885 coding downstream 91565 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 120638 10074275 ~ 10117772 (-)
LOC110514354 LOC106575825 coding downstream 180991 10000040 ~ 10057419 (-)
LOC110527275 LOC106590732 coding upstream 135350 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 949371 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 956676 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 971898 11211319 ~ 11212299 (-)
LOC110495607 LOC106592309 coding upstream 979598 11219019 ~ 11272018 (-)
G1516076 NA non-coding downstream 4794 10233390 ~ 10233616 (-)
G1516070 NA non-coding downstream 14055 10224138 ~ 10224355 (-)
G1516068 NA non-coding downstream 19488 10218722 ~ 10218922 (-)
G1516059 NA non-coding downstream 30628 10207390 ~ 10207782 (-)
G1516058 NA non-coding downstream 31259 10206950 ~ 10207151 (-)
G1516096 NA non-coding upstream 12873 10252294 ~ 10252595 (-)
G1516107 NA non-coding upstream 20459 10258825 ~ 10260556 (-)
G1516116 NA non-coding upstream 34695 10274116 ~ 10274351 (-)
G1516117 NA non-coding upstream 37164 10276585 ~ 10276791 (-)
G1516120 NA non-coding upstream 41495 10280916 ~ 10281445 (-)
G1516062 LOC107575789 other downstream 27577 10210318 ~ 10210833 (-)
G1515880 LOC102777708 other downstream 473185 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 744528 9486842 ~ 9501240 (-)
G1515456 NA other downstream 759192 9478676 ~ 9479218 (-)
G1516562 LOC106575810 other upstream 614148 10853569 ~ 10856314 (-)
G1516757 NA other upstream 808984 11048405 ~ 11048928 (-)
G1516771 LOC106575823 other upstream 849808 11089229 ~ 11092444 (-)
G1516784 unc80 other upstream 928200 11167621 ~ 11174483 (-)

Expression


Co-expression Network