G1516232


Basic Information

Item Value
gene id G1516232
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10367553 ~ 10373192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735501
atctactgcagccctcatcctccgcatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccacatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccacatacaacacccgctctgccccctatctgagatatctactgcagccctcatcctccacatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatACAACACCCtttctgccccctatctgagatatctactgcagccctcatcctccacatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatacaacacccgttctgccccctatctgagatatctactgcagccctcatcctccgcatacgacacccgttctgccccctatctgagatatctactgcagccctcatcctccacatacaacacccgttctgccagtcacattctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagtatgctgcagctagtgactggaacgagatgcaaaaaaacactcaaactggacagttttatctccatctcttcattcaaagactcctatcatggacactcttactgacagttgtggctgctttgcgtgatgtattgttgtctctatcttcttgccctctgtgctgttgtctgtgcctaataatgtttgtaccatgttttgtgctgctaacaTGCTGTGcagctgccatgttgtgttgctaccatgttgttgtcatgtggtgttgctaccatgctgtgctgtcatgtgttgctgccttgctatgttgttgtcttaggtctttctttatgtagtgttgtgtctctcttgtcgtgatgtgtgttttgtcctatatttatttatatatatttttaatcccagccccggTCCCCACAGGAGGCTTTTTaccttctggtaggccgtcattgtaaataagaatttgttcttaactgacttgtctacttaaataaaggttcaatttaaaaaatatatttttaaatgaattAAAGCCTGGAGCCAGAGCTATAGCAATACGGCCGCTGTCCACTCCCTGTGGAGAAGGTGTGATCTATTCTGTACCCAGCTGAACTGTTCacgtggcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaacaggaAAACAGGCCAGATGGACTTGATAAGTGAAACCTCACAGTAACATCTCACCTACAGTGGTATTGCCTTAAGGAATGTACAGAGATGAAGCCTAAATGATTACACAGCCTAAAATAGCCTTATAACACCTtactgttaagggaattttttatctaaaatgactaattatgtatacatttcaatcaggatgtactaatcagaatactattatgctACTGTACATGTATGAATTTTCTCTCTTGATCCCAGTATTGAATATAATGTAgtgaatgtggtcaagagtttagaacaatgatggtctgttccttggtacaaatgaatgaacaatatctccagactgtctagaatgcttatctacactgactgaccttggctctaggcgaggaGGGAATGCTTGAGAGCTATAgggcctttctaccagtgtcaagaagagacggaacattttgaaaacgctgacgtcattttcagtttataatgtgtgtatgtgtatgtactcagtactctcttgaaATAAACGCTGTTACTTGACTTTTAAGACCGGGCTCTGTCCATTCGtataaaataagggtcttacaaaagTGTTTAATTTGaattgggaattaaaacagaggaattaaattccttcaACACTTACAAACACTGTCACCTATTGAGCCAAATCTAATAGAGCGGTAAGTGATTGTAATTAGTTATAGGAATGCAATCAGAAAACATTAGCCGGTGAGTTCGCAATGTTTGATTGAATCATTAGGAATGTAATGGATGTGTGATGACCACCTGTGGAGTGCACATGCATTGGTCCTTATCAGTATCGTCATGGTGACTGACCGACCTTGTTGTTATGCATTTGGGGATCAGCGTTCTACGTATTAGCTGTCATGAGTAAGATCATTACTTCTGAGATTGGTATGGAAAGCAGACCATGGTGActtagggagagaggaagaaagtgaATACATTGTAAAGTGATAGTGAAAACATCCCGAGACCTGACCCCAATGAATCAGGAGAACCACTCGCAAGTAGCTGATTCAGAGCTATTTAtaagtcctctcctcttccacacTAAGCCACTCACCATCTCAAACCCACATCATCACCCAGAAAGCCCTCTGGCGCCCTATTACCCCTGTCTCAGCTGGCCTGCTGTCAGCTTGGCTATATGATCATTAAGGTGGTCCCAGACACTAGTCCCAGACACTAGTCCCAGACACTAGTCCCAGACAGCCACAGCCAGAGACTAATAGCCCGGTAATACTAAGTTAAAGTAACTCTAGTCCTAAGAGAGGAAGATGGTGCGGTGGGCATCTGACATTACATCTGAAGAGGAGAAACAGAACTGAGATAAAGGACCTGGGGTGTATTCAATAGGAATGAGCAAACAGGCCCAAACTGGGAGGGAAAAACCTGAACTAAAAGTTTTtctacggtgtgcactaatgaatacacccctgtagTCTCAGGAAAGCTTCTTCAGAGAAGGCTTGATGAacgcttccatgttgaggcctgGAGTCAGAGTTTAGTGGGTCAGGTATACCCAGGTGGCTATGAGTTGGGGCTAAGAGTTGGGTCTATGTGGTGGGACTATGAGGTGGAGCTATGAGTTGGGGCTATGAGTTGGGGCTATGTTGTGGCTATGAGTTGGGGCTATGTTGTGGCTATGAGTTGGGGCTATGTTGTGGCTATGAGTTGGGGCTATGTTGTGGCTATGAGATGGGGTTATGTTGTGGCTATGAGATGGGGTTATGTTGTGGCTATGAGTTGGGCCTGTGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGGCAAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGGCAAAGAGTTGGGTCTATGTTGTGGCTAAGTGTTGGGTCTATGTTGTGGCTAAGAGTTGGGTCTATGTTGTGGCTAAGAGTTGGGGCTATGAAGTGGGGCTATGAGTTGGGGCTATGAGTTGGGGCTATGAGTTGTGACTATGAGTTGTGCTTATGAATTTAACTTGGGCCATGAGATTGGGCTATGAGGTGGGGCTATGAGGTGGAGCTATGAGTTGGGACTATGAGGTGGAGCTATGAGGTGGAGCTATGAGTTGGGGCTATGAGTTGGGGCCATGAGATGGGACTATGAGTTGTGGTTATGAATTGAATTCGGGCCATGAGCTGGGATTAGGAGTTGGGGCTATGAGTTGGGACTATGAGTTGTGGCCTTGAATTGAATTCGGGCCATGAGATGGGGCTATGAGGTGAGGTAGGGAAAGTATTACTTTATTCTACCACTAGGGGCACCATATGGCATTTCAGATGGGGAGACCTCACTACTGTCAGAGACTGACTCCTGCCAGGCAGGATCTCAGTCCTACTCCTTtgaaaacacatgcacacacacaccagcctcaACACtcagagggacacagagggagCATGTGTGAGCGCATACGCAAGAGGCTGGAGACATCGGACTGTGTGTTCAGAACGCAAACCACTGTAATTACCAGTTACAGTTAACTTTACAGTAAACCAGAGAAGACAATTGTATTTTAACAAAAGACAATTGTATTTTAACAAGCTGTTTCTTTATAAAACAAGAAATGGTTGAGCTCATCGGGTATCCAGACTATTCTGAAACATCGTAAACATCTTCTTTAGGTGGTATTGGAGTTCATGTGGGTTCACTTTTCATTTTGACTTTGATGGACTAATGATTTAAGTTGTATGTAACTCGTGGTCTTATTTGTTGTCTTGTCTTTTAGTTATGTCATTTTGCCATTAGATGCAACAGAAAACATCAAGGGAAGAGTCTGTGGGGTTTGCTGCGTCTTTGCCCCAGATCAGGCTGCAGCAGGTTTGTAGGCCAGCCAGTAGAAATACTTCACCACCACTGTGATCTCTGTGTCTGGATTCGACTCCCCCATCTCAGACAGCAACCTCGGGccagaagaggaggagtggaacAGAGTGAGTGACAGTCAAAGAAGATGGTCATCAGCTCACTAAGATTTTCTTAGAGATGAGAAATTCAACTCATTTCAAACCAACCTGCACTGCACTATTTATGGAATTGTGTtcaaatgtttatatatataaagCTATAAGCAGATAAGTCTCCCCTCGTAGATAGCTGCTTCCAGCGTTCATAAATGTAATAGAAGTGTGCAGACAGTAGTTTGCAAAAATAAACATGGTGTAAACATTGGTAAAGGCACATTCAATTTAATTCCAGCCATTTTTAGCACCTGAATGCTGAAGCTCACCTGTTCCTGAAGTCCTGGGAGAACCTGTGGGCTTCCACTGGATCCTGCTTCAGAAACGCCCGATAGCTAGAGAAGGTCTCCACCATGCCGATGTAGCTACTCAGAGGCATTGGTCTCCTCATCCGCAGACACTCATGCCTGGAAAGAGCAACAcaaaaacactgaacaaaatCAGAATACTATTTTATGCTAAGCTAGGCCAGGCATTCTATGCTAGGCTAAGCTATGCTATTCTATGATACTCTAGACTAGGCTATGCTAGGCTACGCTAGGCTAGGCGATGGTATGCTAGTATACTAATATTCAGGGCAATCgtaaagtattcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735501 True 5194 lncRNA 0.45 3 10367553 10373192

Neighbor

gene id symbol gene type direction distance location
LOC110516308 LOC105023143 coding downstream 137672 10174859 ~ 10229881 (-)
LOC110495586 LOC106574945 coding downstream 209047 10149011 ~ 10158506 (-)
LOC110497041 LOC106574885 coding downstream 220708 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 249781 10074275 ~ 10117772 (-)
LOC110514354 LOC106575825 coding downstream 310134 10000040 ~ 10057419 (-)
LOC110527275 LOC106590732 coding upstream 1579 10374771 ~ 10387073 (-)
LOC118941093 NA coding upstream 815600 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 822905 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 838127 11211319 ~ 11212299 (-)
LOC110495607 LOC106592309 coding upstream 845827 11219019 ~ 11272018 (-)
G1516147 NA non-coding downstream 28889 10338299 ~ 10338664 (-)
G1516146 NA non-coding downstream 30525 10336798 ~ 10337028 (-)
G1516121 NA non-coding downstream 84188 10283020 ~ 10283365 (-)
G1516120 NA non-coding downstream 86108 10280916 ~ 10281445 (-)
G1516117 NA non-coding downstream 90762 10276585 ~ 10276791 (-)
G1516239 NA non-coding upstream 11889 10385081 ~ 10385357 (-)
G1516249 NA non-coding upstream 52075 10425267 ~ 10425742 (-)
G1516253 NA non-coding upstream 59181 10432373 ~ 10432614 (-)
G1516255 NA non-coding upstream 66620 10439812 ~ 10440026 (-)
G1516256 NA non-coding upstream 67041 10440233 ~ 10440566 (-)
G1516107 NA other downstream 107561 10258825 ~ 10260556 (-)
G1516062 LOC107575789 other downstream 156720 10210318 ~ 10210833 (-)
G1515880 LOC102777708 other downstream 602328 9761473 ~ 9765225 (-)
LOC110495556 LOC106574923 other downstream 873671 9486842 ~ 9501240 (-)
G1516562 LOC106575810 other upstream 480377 10853569 ~ 10856314 (-)
G1516757 NA other upstream 675213 11048405 ~ 11048928 (-)
G1516771 LOC106575823 other upstream 716037 11089229 ~ 11092444 (-)
G1516784 unc80 other upstream 794429 11167621 ~ 11174483 (-)
LOC110528752 agap1 other upstream 1235844 11463472 ~ 11746107 (-)

Expression


Co-expression Network