G1516563 (LOC106575811)


Basic Information

Item Value
gene id G1516563
gene name LOC106575811
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10856635 ~ 10859949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1735908
GAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACCAAGTACAGATGTCGTTTTCTGGTAGATAAAGAGACGTGGTGTGGCagctatggtgtccatattaggactgGCTCAGGGTCAAAACAGGCCCTTCTAATATGAACACGTAAAAAGAGAGACTGGTTTTTCACTGGTTTTGAAAATCATAGAATCTGCAATCTGTCATTTCTGTCCTTGGTGAAAAACAAGTTAAACACAACATGAATACTTCACATTGAAATGAAATGTTAATTCCAGTTTGCGGAACTATTTGGGTCCAAAGGCAGAACAAAATAGTTGTCATCATAACCAGAGGCAGTAGAACGGCAGGAAGCAGACAAATAGCACATACATATGAAGACTTCTCATTCAGTACTTCACCGTGTCCCCAagtttctctctgttctgttccttCACATATCTCAACCTTGTAggtggaaatgtgaaatgcatTTGAAATAATCACGTGGTTGGATTATTACAACTAAGAAAAAAcacgttatttaaaaaaatatttttcacttCCTGCTCGTTGGATCAATGTGCTCCATATGGActaaaacaaacacccacaatgCAGCAGAAACATGTATCAATAACCCTCTTCTCTGCCACAAGGACAGCTGGGATAAGCCTCCTTATGCTGTACGACGAAATATAGACAAAGTAAAGGCAAATCGAGAAGGAAATGAAAAAACGAACATGCATGGCTCCATAACAGCAGTGTAACCAAATGAGTCTGAAACAGAAGTTTACCGGGGGTCCTGGACGTTCCACTAGGCAGCAGAAGCTGTCTGGCAGTATTCTCATAGGTGTTTATGAGGCATCAGTAGTACAGGTAACTGTCCTAAGTCACTATTTATTCTAAATGGTCAGTGACACATGACTTGTAATCACTGGTCCtgcccgagtggcgcagcggtctaaggcactgtatctcagtgctaaaggcgtcCCTACAGACCAAGCAGTATCACAACCTGCCATGAatgagagtcccatagggaggcgcaaATTGGACCAGCGTTGTCAgagtaggtcgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatatcataaaaaaaatgtttccatTTGGCACTAGTCATACCCTTCACATTAAGGTTGGGGTCAGTTCAGAATTGAATTGAGTTAATTAATAAACAGCCATTTTAAGTCATGAATTACATTTCTGATTTGACAACTGATCTGCATGTAGCCCTCGTCTCAGAGTAACGGAGAGACTTGTGGTGAAGTCACACTAGAAGATTCAGTGTCAAATCTCTGGACCTTGACATTTTGGATTCAGAATGAGGAGTTGGTAATCCTATTGCTGTATAGAGGTGAACTGAGAGTtgtcagggggagagagagaggaggctagcTGACTGTCAGTGGGCTTAGTTTAACCACGGGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTGCTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTGCTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACTGCTACCTCTATAGAGGACTAGTTCTGTGGTTAA
>TU1735904
GAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACCAAGTACAGATGTCGTTTTCTGGTAGATAAAGAGACGTGGTGTGGCagctatggtgtccatattaggactgGCTCAGGGTCAAAACAGGCCCTTCTAATATGAACACGTAAAAAGAGAGACTGGTTTTTCACTGGTTTTGAAAATCATAGAATCTGCAATCTGTCATTTCTGTCCTTGGTGAAAAACAAGTTAAACACAACATGAATACTTCACATTGAAATGAAATGTTAATTCCAGTTTGCGGAACTATTTGGGTCCAAAGGCAGAACAAAATAGTTGTCATCATAACCAGAGGCAGTAGAACGGCAGGAAGCAGACAAATAGCACATACATATGAAGACTTCTCATTCAGTACTTCACCGTGTCCCCAagtttctctctgttctgttccttCACATATCTCAACCTTGTAggtggaaatgtgaaatgcatTTGAAATAATCACGTGGTTGGATTATTACAACTAAGAAAAAAcacgttatttaaaaaaatatttttcacttCCTGCTCGTTGGATCAATGTGCTCCATATGGActaaaacaaacacccacaatgCAGCAGAAACATGTATCAATAACCCTCTTCTCTGCCACAAGGACAGCTGGGATAAGCCTCCTTATGCTGTACGACGAAATATAGACAAAGTAAAGGCAAATCGAGAAGGAAATGAAAAAACGAACATGCATGGCTCCATAACAGCAGTGTAACCAAATGAGTCTGAAACAGAAGTTTACCGGGGGTCCTGGACGTTCCACTAGGCAGCAGAAGCTGTCTGGCAGTATTCTCATAGGTGTTTATGAGGCATCAGTAGTACAGGTAACTGTCCTAAGTCACTATTTATTCTAAATGGTCAGTGACACATGACTTGTAATCACTGGTCCtgcccgagtggcgcagcggtctaaggcactgtatctcagtgctaaaggcgtcCCTACAGACCAAGCAGTATCACAACCTGCCATGAatgagagtcccatagggaggcgcaaATTGGACCAGCGTTGTCAgagtaggtcgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatatcataaaaaaaatgtttccatTTGGCACTAGTCATACCCTTCACATTAAGGTTGGGGTCAGTTCAGAATTGAATTGAGTTAATTAATAAACAGCCATTTTAAGTCATGAATTACATTTCTGATTTGACAACTGATCTGCATGTAGCCCTCGTCTCAGAGTAACGGAGAGACTTGTGGTGAAGTCACACTAGAAGATTCAGTGTCAAATCTCTGGACCTTGACATTTTGGATTCAGAATGAGGAGTTGGTAATCCTATTGCTGTATAGAGGTGAACTGAGAGTtgtcagggggagagagagaggaggctagcTGACTGTCAGTGGGCTTAGTTTAACCACGGGTTCTGTGGTTAAACTACTACCTCTATAGAGGACTAGTTCTGTGGTTAAACT
>TU1735902
GAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACCAAGTACAGATGTCGTTTTCTGGTAGATAAAGAGACGTGGTGTGGCagctatggtgtccatattaggactgGCTCAGGGTCAAAACAGGCCCTTCTAATATGAACACGTAAAAAGAGAGACTGGTTTTTCACTGGTTTTGAAAATCATAGAATCTGCAATCTGTCATTTCTGTCCTTGGTGAAAAACAAGTTAAACACAACATGAATACTTCACATTGAAATGAAATGTTAATTCCAGTTTGCGGAACTATTTGGGTCCAAAGGCAGAACAAAATAGTTGTCATCATAACCAGAGGCAGTAGAACGGCAGGAAGCAGACAAATAGCACATACATATGAAGACTTCTCATTCAGTACTTCACCGTGTCCCCAagtttctctctgttctgttccttCACATATCTCAACCTTGTAggtggaaatgtgaaatgcatTTGAAATAATCACGTGGTTGGATTATTACAACTAAGAAAAAAcacgttatttaaaaaaatatttttcacttCCTGCTCGTTGGATCAATGTGCTCCATATGGActaaaacaaacacccacaatgCAGCAGAAACATGTATCAATAACCCTCTTCTCTGCCACAAGGACAGCTGGGATAAGCCTCCTTATGCTGTACGACGAAATATAGACAAAGTAAAGGCAAATCGAGAAGGAAATGAAAAAACGAACATGCATGGCTCCATAACAGCAGTGTAACCAAATGAGTCTGAAACAGAAGTTTACCGGGGGTCCTGGACGTTCCACTAGGCAGCAGAAGCTGTCTGGCAGTATTCTCATAGGTGTTTATGAGGCATCAGTAGTACAGGTAACTGTCCTAAGTCACTATTTATTCTAAATGGTCAGTGACACATGACTTGTAATCACTGGTCCtgcccgagtggcgcagcggtctaaggcactgtatctcagtgctaaaggcgtcCCTACAGACCAAGCAGTATCACAACCTGCCATGAatgagagtcccatagggaggcgcaaATTGGACCAGCGTTGTCAgagtaggtcgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatatcataaaaaaaatgtttccatTTGGCACTAGTCATACCCTTCACATTAAGGTTGGGGTCAGTTCAGAATTGAATTGAGTTAATTAATAAACAGCCATTTTAAG
>TU1735903
GAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACCAAGTACAGATGTCGTTTTCTGGTAGATAAAGAGACGTGGTGTGGCagctatggtgtccatattaggactgGCTCAGGGTCAAAACAGGCCCTTCTAATATGAACACGTAAAAAGAGAGACTGGTTTTTCACTGGTTTTGAAAATCATAGAATCTGCAATCTGTCATTTCTGTCCTTGGTGAAAAACAAGTTAAACACAACATGAATACTTCACATTGAAATGAAATGTTAATTCCAGTTTGCGGAACTATTTGGGTCCAAAGGCAGAACAAAATAGTTGTCATCATAACCAGAGGCAGTAGAACGGCAGGAAGCAGACAAATAGCACATACATATGAAGACTTCTCATTCAGTACTTCACCGTGTCCCCAagtttctctctgttctgttccttCACATATCTCAACCTTGTAggtggaaatgtgaaatgcatTTGAAATAATCACGTGGTTGGATTATTACAACTAAGAAAAAAcacgttatttaaaaaaatatttttcacttCCTGCTCGTTGGATCAATGTGCTCCATATGGActaaaacaaacacccacaatgCAGCAGAAACATGTATCAATAACCCTCTTCTCTGCCACAAGGACAGCTGGGATAAGCCTCCTTATGCTGTACGACGAAATATAGACAAAGTAAAGGCAAATCGAGAAGGAAATGAAAAAACGAACATGCATGGCTCCATAACAGCAGTGTAACCAAATGAGTCTGAAACAGAAGTTTACCGGGGGTCCTGGACGTTCCACTAGGCAGCAGAAGCTGTCTGGCAGTATTCTCATAGGTGTTTATGAGGCATCAGTAGTACAGGTAACTGTCCTAAGTCACTATTTATTCTAAATGGTCAGTGACACATGACTTGTAATCACTGGT
>TU1735901
GTGAATTAACTGTATACAGTGGTGTAAGGTATTAAACACTTAAACCTTTTCCATGGTGTGTTTTACCTTAACAACAGAAAGTTACTACAGAATTTGTGCTACTGATTTCTTTCCATCTCCAAACAGCAATAGAAGCTGTCCCTCAAACCATCTTTCCTCGGGACAAAAATGGAAAATACTATTAATTGAACTAACAAATACTCAGGGTAAAGAGCAATAACACTCACATTGAGGTATCATGCATGATGATATAGTATTAGGTACAACAGGCATAGCTAATACAGTTCTACTGCAGTGGTGGAGGATACAGTACTTGTGCTGCTGATTGTGTCATAGAATACTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATATTGTATAGGAGAATACCAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtatagga
>TU1735911
CTGAACAGTAAAGATGAATCCTATACTGAACAGTAAAGATTAATCCTATACTGAACAGTAAAGATTAATCCTATACTGAACAGTAAAGATGAATCCTATATTGAACAGTAAGTGTATGTTTGTGAATTAACTGTATACAGTGGTGTAAGGTATTAAACACTTAAACCTTTTCCATGGTGTGTTTTACCTTAACAACAGAAAGTTACTACAGAATTTGTGCTACTGATTTCTTTCCATCTCCAAACAGCAATAGAAGCTGTCCCTCAAACCATCTTTCCTCGGGACAAAAATGGAAAATACTATTAATTGAACTAACAAATACTCAGGGTAAAGAGCAATAACACTCACATTGAGGTATCATGCATGATGATATAGTATTAGGTACAACAGGCATAGCTAATACAGTTCTACTGCAGTGGTGGAGGATACAGTACTTGTGCTGCTGATTGTGTCATAGAATACTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATATTGTATAGGAGAATACCAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtataggagAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTTCCAACTACATACTGTTTAGGAGAATACTAAGGGGCCAAAACCTTtccaactacatactgtatagga

Function

NR:

description
PREDICTED: uncharacterized protein LOC106575811

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1735908 False 2021 lncRNA 0.41 1 10856635 10858655
TU1735904 False 1628 lncRNA 0.41 1 10857028 10858655
TU1735902 False 1338 lncRNA 0.41 1 10857318 10858655
TU1735903 False 1047 lncRNA 0.40 1 10857609 10858655
TU1735901 False 995 lncRNA 0.39 1 10858834 10859828
TU1735911 True 1116 lncRNA 0.38 1 10858834 10859949

Neighbor

gene id symbol gene type direction distance location
LOC110527275 LOC106590732 coding downstream 469562 10374771 ~ 10387073 (-)
LOC110516308 LOC105023143 coding downstream 626754 10174859 ~ 10229881 (-)
LOC110495586 LOC106574945 coding downstream 698129 10149011 ~ 10158506 (-)
LOC110497041 LOC106574885 coding downstream 709790 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 738863 10074275 ~ 10117772 (-)
LOC118941093 NA coding upstream 328843 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 336148 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 351370 11211319 ~ 11212299 (-)
LOC110495607 LOC106592309 coding upstream 359070 11219019 ~ 11272018 (-)
LOC110495612 LOC106574782 coding upstream 414946 11274895 ~ 11299017 (-)
G1516560 NA non-coding downstream 11270 10844924 ~ 10845365 (-)
G1516542 NA non-coding downstream 70701 10785003 ~ 10785934 (-)
G1516539 NA non-coding downstream 79517 10776794 ~ 10777118 (-)
G1516438 NA non-coding downstream 154114 10702025 ~ 10702521 (-)
G1516425 NA non-coding downstream 167899 10688441 ~ 10688736 (-)
G1516543 NA non-coding upstream 1197 10861146 ~ 10862047 (-)
G1516572 NA non-coding upstream 10830 10870779 ~ 10872043 (-)
G1516575 NA non-coding upstream 26286 10886235 ~ 10886473 (-)
G1516576 NA non-coding upstream 28361 10888310 ~ 10888560 (-)
G1516579 NA non-coding upstream 29049 10888998 ~ 10889560 (-)
G1516562 LOC106575810 other downstream 321 10853569 ~ 10856314 (-)
G1516107 NA other downstream 596643 10258825 ~ 10260556 (-)
G1516062 LOC107575789 other downstream 645802 10210318 ~ 10210833 (-)
G1515880 LOC102777708 other downstream 1091410 9761473 ~ 9765225 (-)
G1516757 NA other upstream 188456 11048405 ~ 11048928 (-)
G1516771 LOC106575823 other upstream 229280 11089229 ~ 11092444 (-)
G1516784 unc80 other upstream 307672 11167621 ~ 11174483 (-)
LOC110528752 agap1 other upstream 749087 11463472 ~ 11746107 (-)
LOC110527304 LOC106575687 other upstream 1079181 11926474 ~ 11972660 (-)

Expression


Co-expression Network