G1516728 (LOC106575822)


Basic Information

Item Value
gene id G1516728
gene name LOC106575822
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 10944415 ~ 10956997 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1736105
GTAAAATGGAGGCTTTAGCAGACGGACGGATGGACTCACCGATTCTTGCCGCTCAACGCGCACGCTGCCATTCCAAATGGACAAACTCTCCGCTGCCCCCTAGTGGCTTTGCTCTGTTATTATAACATCAGGCCGAGACAAGGAGCCAGTCAGATTCAGAACACTAGAACCATGAATAATAGTTTAATACCAAAGGtaacagacaggtgagatgtaaAAAATACCTTGTTTTATTATTTAGCCAATGGAAACGTGAAGAAACCGTAGATGAGCAGTAGAGTTACAAGcgtacatcacacacacacaacttatgaTGCGCCACATGGTcattacagttttactgtagtACTTTGTCACACAGTATAATCATTTTACTACAAAGTTTCTATTGCAGCCACAATCTGCAAAGATGAAAAATCCTCTACACCATGGAATTTATATTCCGGTTATTCAAAAAAAAAAGGTGAAATCTAAAATTAACAATTAACAAACATGAATGTTGGAGCAAAGATTAttactatttttttttaataggAGATTGGTCGGTACTCAAATCCCCTTGGTATTTTTATTGATTCATAGACAGTACAGCTGGACAGCAGAGCCAGATAAAAGGGACCGacaggagaggtggagacagggcTCCAACCCCCGTCACCTAGGGGGTAATTATGGTCCCGAGTTGAGTGGACCCATTGACCAGACTCCAGCCCAAGCAAACAAATCCTAGTCAATTTCATCTTAGACAAACTGAAGTCTCATTGCGTCATAAAATGAATGAAAAGTAAATATTGAATTGATGTCCATAAATGAACAATCCACTCGAGGTGGTTCTCTCTGCTTATGCCCCATGTCTAGACACAAAATAGTGAGCCAGTTTCAGTGCATAACACTTCAAACCCCCATGCACCATGCACATATTAGACTAGGGGCGACATTTTCCTCACGCAAAAAAAAAAGGTGCAGCTCTGTGCAAAGAATACCATAAAACTCAATCTGTATGATAAAAAAACTCATTATAAAGCATGATTTAATTTGAACTTTTCAACAAGTAGTGTTATAAGAAGGCAAGAATTTAGCCAGGGTTTAGTCAACTGAGCAATGCATGCGATGTGTGCGATGCAATTGAGAGTTGAAGTTTTTGGAATTCACATGGGATAATTTGCCTTCACATCTATTTGATATCTTATGGTTATTTTGCTCACTGCTCAATGCCATTTGCTCGTGCAAAATGTCACCCTTGCACTGATTGTCCCTGGTCCCCCTCCCTACAACACACAATTACTGTTCGTTCAGCCAATAAGGAGAGACTGTGGGAAGATTTTGTTGTGATGGAAAAAGTCATCTTGATTATCACCTGCAGAGGTGACTCTACGGTGTATATGCCAGTGTGTGTTTCTTTAAaatgtctcggtgtgtgtgtgagagagatggagagagattagGTGCTTGGATGTGTATGATAGTTTCCAGAGCAGCAGGCAGGAGACCAGGGGTAAGCAGGGATACCTTTTACACCTCAAATGCTGGGAACTTTGATTTCAGGGGCTGGAGGAGGTCTGCCAGGAAGTAGATGGTTCCAGCCATGCCTTCAAATAATGAGAACGGAGTGTCCGGTGTCCTGCAGCCATGTTTGCCGTAGTTCATGCACCAGTCTGCAAACATACAGGCCCTGTAGAGGTGCTTGGGGTCATGGGTGAGCTTGTAGAGGGCCAGGAAGGCGTAGGCGTTACCCGCGGCGCCGTGACACAGGCCGTAGCCCTTCTTCAGCAGGCCCCTGTGCCACACCACCTCCCCACACTGTAGAGCCTCTTCCAGGTACTGGCCCACTCCAAACACCTTGTAGGCCTGCAGCAGCATGTAGATAATGCCTGGGGCTCCATGACACCAGTGCACCAGCAGGTCCCTGTTGTCCCCTATGCAGGGCGGGTAGTTCCCAGTGGGAAAGCGGAGTCGACAGACGTGGTCCACGCTGGGCCTCACCAGCCTGTGGACCCTCTCATCCCCCGCCACATAGCCTGGCTGCATGAGGAAGTAGTAGATGCCTGCCAGGCCGTGGGCGGGGCCTACATACTGTTCTTGGTACCACTCGTACATCAGAGGGCTCTGGTCCTGACAACGGAACCTCTGAGACTGGCCCTCCCCCGATATTAACACAGCCTCACAGATCTGTTGGATGTACTGGATGGGGATCTTGTCGTGGCCAAACTGCTGGTTGATGAAGGTCAGGGCGTAGAGGTAACCCATCCTGCCATAGAGCAGCTCATCAGGGAGACCGCTGGCCCCAGAGCCCATTACCACCGACTGATGGAGCTGCAGCAGCCTGCTGAGGCATTCGTCTGACTCCTGTGCCCTCTGTACTCTATGGTAGACCACTGCAGCCACGGCCAGGGGCCCGGCGTCACCGCACAGGAAGGTGACATCACGTCGCCGCGTCGGACACGTCAGGCTGTGGCCCACGTAGTCCAGAGCCTTCTGCAGGAATGAAGGCTCGCCGAACACACCGTGGAGGTGCAGGTAAAGCAGGGCGATGCCTGCCCAGCCAGTGTAGCCAGTGCAGTCTCTAGGGTCAGCAGACTTGAGCCCATTCTCCATGTGCATCAACAGCTGACTGATGGCATTGCTCAACCGCCCTGCAAACTCTGCTGTGAGCTTTCCTTGTGAATCAAATAGTTCTTGCACAGATGCAGGGTTCCCATCATAGTCTGCGTATGGGTTCTTCCAAGCTCTCTGGTCCATTTTCTTCCAACTCCCCTCCGCTCCCACTAAAACTCAAGTTTTTTGGTCAAACGAGAAGGAATCACTGCAGACGGTTGATGTTTATAATGTTCTTGATCGCTTCACTGACAAACACGTTGAATGGACTTTACAACGTCAGTGTGGCCACCTGGTGTGAAGGAGTCCGCATTACAggccttttttg

Function

NR:

description
PREDICTED: lanC-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1736105 True 2923 lncRNA 0.48 10 10944415 10956997

Neighbor

gene id symbol gene type direction distance location
LOC110527275 LOC106590732 coding downstream 557342 10374771 ~ 10387073 (-)
LOC110516308 LOC105023143 coding downstream 714534 10174859 ~ 10229881 (-)
LOC110495586 LOC106574945 coding downstream 785909 10149011 ~ 10158506 (-)
LOC110497041 LOC106574885 coding downstream 797570 10138344 ~ 10146845 (-)
LOC110497040 LOC106593457 coding downstream 826643 10074275 ~ 10117772 (-)
LOC118941093 NA coding upstream 231795 11185131 ~ 11194773 (-)
LOC110495606 LOC106575688 coding upstream 239100 11196097 ~ 11204430 (-)
LOC110527288 LOC106574778 coding upstream 254322 11211319 ~ 11212299 (-)
LOC110495607 LOC106592309 coding upstream 262022 11219019 ~ 11272018 (-)
LOC110495612 LOC106574782 coding upstream 317898 11274895 ~ 11299017 (-)
G1516723 NA non-coding downstream 3700 10940153 ~ 10940715 (-)
G1516715 NA non-coding downstream 26393 10917798 ~ 10918022 (-)
G1516581 NA non-coding downstream 51753 10892425 ~ 10892662 (-)
G1516579 NA non-coding downstream 54855 10888998 ~ 10889560 (-)
G1516576 NA non-coding downstream 55855 10888310 ~ 10888560 (-)
G1516727 LOC100194643 non-coding upstream 2321 10959318 ~ 10967535 (-)
G1516735 NA non-coding upstream 29325 10986322 ~ 10988096 (-)
G1516738 NA non-coding upstream 43885 11000882 ~ 11001709 (-)
G1516741 NA non-coding upstream 55933 11012930 ~ 11013144 (-)
G1516742 NA non-coding upstream 56734 11013731 ~ 11014268 (-)
G1516562 LOC106575810 other downstream 88101 10853569 ~ 10856314 (-)
G1516107 NA other downstream 684423 10258825 ~ 10260556 (-)
G1516062 LOC107575789 other downstream 733582 10210318 ~ 10210833 (-)
G1515880 LOC102777708 other downstream 1179190 9761473 ~ 9765225 (-)
G1516757 NA other upstream 91408 11048405 ~ 11048928 (-)
G1516771 LOC106575823 other upstream 132232 11089229 ~ 11092444 (-)
G1516784 unc80 other upstream 210624 11167621 ~ 11174483 (-)
LOC110528752 agap1 other upstream 652039 11463472 ~ 11746107 (-)
LOC110527304 LOC106575687 other upstream 982133 11926474 ~ 11972660 (-)

Expression


Co-expression Network