Gene
RNA
| Item | Value |
|---|---|
| gene id | G1517899 |
| gene name | eed |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048582.1 |
| NCBI id | CM023236.2 |
| chromosome length | 74657750 |
| location | 12275214 ~ 12278588 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| eed | Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development). |
| description |
|---|
| polycomb protein EED isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1737642 | True | 1433 | lncRNA | 0.51 | 8 | 12275214 | 12278588 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110495544 | LOC106575695 | coding | downstream | 3026 | 12260777 ~ 12272188 (-) |
| LOC118936562 | LOC106594175 | coding | downstream | 22665 | 12250356 ~ 12252549 (-) |
| LOC118941062 | NA | coding | downstream | 24758 | 12245879 ~ 12250456 (-) |
| LOC110512633 | LOC106575771 | coding | downstream | 29548 | 12240234 ~ 12245743 (-) |
| LOC118941032 | LOC106575777 | coding | downstream | 37868 | 12230271 ~ 12237346 (-) |
| ck073 | ck073 | coding | upstream | 3043 | 12281631 ~ 12288102 (-) |
| LOC110497022 | LOC106574871 | coding | upstream | 52346 | 12330934 ~ 12342330 (-) |
| LOC110516060 | LOC106575774 | coding | upstream | 75464 | 12354052 ~ 12380993 (-) |
| LOC110528732 | LOC105019714 | coding | upstream | 191496 | 12470084 ~ 12506726 (-) |
| LOC110527216 | nud15 | coding | upstream | 274080 | 12552668 ~ 12553871 (-) |
| G1517889 | NA | non-coding | downstream | 46557 | 12227855 ~ 12228657 (-) |
| G1517885 | NA | non-coding | downstream | 54023 | 12220854 ~ 12221191 (-) |
| G1517842 | NA | non-coding | downstream | 113988 | 12105565 ~ 12161226 (-) |
| G1517867 | LOC106575792 | non-coding | downstream | 118909 | 12155632 ~ 12156305 (-) |
| G1517848 | NA | non-coding | downstream | 162120 | 12112465 ~ 12113094 (-) |
| G1517905 | NA | non-coding | upstream | 15924 | 12294512 ~ 12294796 (-) |
| G1517907 | NA | non-coding | upstream | 18721 | 12297309 ~ 12297775 (-) |
| G1517918 | NA | non-coding | upstream | 30471 | 12309059 ~ 12309613 (-) |
| G1517919 | NA | non-coding | upstream | 31365 | 12309953 ~ 12310249 (-) |
| G1517924 | NA | non-coding | upstream | 37829 | 12316417 ~ 12318729 (-) |
| G1517822 | LOC106575686 | other | downstream | 252774 | 12020772 ~ 12023228 (-) |
| LOC110527304 | LOC106575687 | other | downstream | 302894 | 11926474 ~ 11972660 (-) |
| G1517784 | NA | other | downstream | 326869 | 11947565 ~ 11948345 (-) |
| G1517902 | NA | other | upstream | 6490 | 12285078 ~ 12285632 (-) |
| G1518019 | LOC106575703 | other | upstream | 305140 | 12583728 ~ 12600331 (-) |
| LOC110495512 | LOC106574713 | other | upstream | 627623 | 12898791 ~ 12910954 (-) |
| LOC110513917 | LOC106575727 | other | upstream | 693065 | 12933662 ~ 13031321 (-) |
| bcor | LOC106574692 | other | upstream | 1106168 | 13312628 ~ 13402659 (-) |
