G1517924


Basic Information

Item Value
gene id G1517924
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12316417 ~ 12318729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737669
CCAAACCAATGCGCAGGGATAGGGCGCGAATAGCCAATGGCGTGAGGGATTGGTGTTTCCTTTAACAGCTCGTCAGAAGCGTCTTCGAATAGACCAATCAGATTTGGAGGCACGTCCAAACTAATTTGGGTAGACATATCAGAGTGGAATGTATGGCCTATTTAGCTACTGCCTCCAAAATAAATTGATTTCATGAATGATTGTGTAAGACTTCTGAAAAAGGTATTATTTATTTGCATTCAAATGTCCTTATGATAAAAAATGAACACCAATTCAATTGAGAGATTATTCATCACACCCACTAAAGATtataattacatttaaaaaatgaactGTCGTGTGATTACGCTTTCATAGTACTTGatttgaccactagatggtgcagTAGTATTGCTGTACTGTTAGATTGGCAGCGTTCAAAAATTATCTTCCACAAGTCAAGAGCCTAATGTAACAGTGCACATTGCCTCCTGACAAACAAAATGATTTAAAATACTATAGAAAGTGCAAACATGAATTAATAAATATTAGTGCTAAAATCATACATTGAGTTAaacacaatatactgtacatgctGACATCTGTGTTGATCAAATGTTGATCTGGAACTGTATATAAAACATGCCTTGTAAATTCATTTCAGACCCTACAAAGTACATGAAACAGTTGTAGAATTGTAGCACATGTTTCATTTGTGTAATTGAATATCTAAAAAGACAATTACATTGCACAAAAACACCCACACATGATGCAGTCAAGTTAACAACAGGCTCCTAGGCCCACCTGTGTGGTTACATATGATACATGTAGATTTCACAGATTTGTTTGGGAGCCGCCACCAGAATGACTCTTTTTTCCTAGTGTAACTGTCTAGGCCTAGAACTTCTGTTAGTTATGCTAAGGTGAGTCTTTCCCTGCGCTCATATCTCCCCAACGTTACACACCCAACCTCACCTGTCGCTCTGCTCTTCTAACTACAGAACCATCCAACTGCAATGCTCcactgttctactaactacagaacCATCTAACTGCAATGCCCcactgttctactaactacagaacCATCTAACTGCAATGCTCcactgttctactaactacagaacCATCTAACTGCAATGCTCcactgttctactaactacagaacCATCTAACTGCAATGCCCCAGTGCTCTACaatctttctgtacagatgtaggatctttatttgagacagtttgctacagaaggaaaatatacaggaaatgtaaattattatgtggattataattactggacattacagtataatttttgtaagggaaaatcaagtctgaaatttcaaagtggaaattacaaacttcagaagccctTTTAAAACTCAGATACACTACAAGCTTGTATTTCCTGCTGCGCAGGAATATTCCTGCAaaaacaggatgatcaaattaaaatcctacatctgtatgcttCTCTGAGtcagtcatccagccagccagtcagtcactcagtcttCATCACTATCCTCGTAGTCGTCCCTGGTGCTGGTCTGAGAGCAGACGTGTAAACAGACCCCACAGCAGAGTAGCAGGAGCAGCACGGTGTGGCTGAGCGTCAACACAAACACAGCAAATAGGTACAGAGACTTCCTGCAGTAGTCCTGTGGCTGGTGGAAGGGTGTGATGAAGTTAGGCTGGAACACAGAGAACACCCAGTAGTTCCCCAGGAGGAACCAGACGAACAGGAACAGGCTGAGGATGACGTGCACGTAATACTTGTTTGCGTTCTGTCTCCATGGATACTCGTCGGCATCGTCGTCGCCGATGACGACCGACTTGGAGATGAGCGACCTCATGCGGGTGGTGTCGTACAGGAGCAGCGTGACCTGGAAGGTTCAGGGTCAGAGGTCGTGGGTCAGATTGGGGTGAACACTAGAGCGACAGTGCCTGCCTTCCTTACATATTGTTTTGCACTGTCTATCATTTTTACAGCCTGGAAGTGTTTGGAACCGGTTCTACTTTCCTGTTGCCACATTACAACCTATGATCTGGAACACATCCATTACCTTTACACTGCCAATAACCCCGCCCACCAGCAGGTAGAGAGGAATCATTGGCTGAACAGGGCAGTCGTCTATAGACTTCACACCTGCAGGGGTTAAACATCATCAATAGTTCATTAGTTTACCAACATAACTCAATAGAACAAATACAGTACCAAAACCAATATGTGCATCaccccagacccc

Function

NR:

description
uncharacterized protein LOC110495541 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737669 True 2226 lncRNA 0.42 2 12316417 12318729

Neighbor

gene id symbol gene type direction distance location
ck073 ck073 coding downstream 28315 12281631 ~ 12288102 (-)
LOC110495544 LOC106575695 coding downstream 44229 12260777 ~ 12272188 (-)
LOC118936562 LOC106594175 coding downstream 63868 12250356 ~ 12252549 (-)
LOC118941062 NA coding downstream 65961 12245879 ~ 12250456 (-)
LOC110512633 LOC106575771 coding downstream 70751 12240234 ~ 12245743 (-)
LOC110497022 LOC106574871 coding upstream 12205 12330934 ~ 12342330 (-)
LOC110516060 LOC106575774 coding upstream 35323 12354052 ~ 12380993 (-)
LOC110528732 LOC105019714 coding upstream 151355 12470084 ~ 12506726 (-)
LOC110527216 nud15 coding upstream 233939 12552668 ~ 12553871 (-)
LOC118941039 NA coding upstream 252993 12571503 ~ 12583644 (-)
G1517919 NA non-coding downstream 6168 12309953 ~ 12310249 (-)
G1517918 NA non-coding downstream 6804 12309059 ~ 12309613 (-)
G1517907 NA non-coding downstream 18642 12297309 ~ 12297775 (-)
G1517905 NA non-coding downstream 21621 12294512 ~ 12294796 (-)
G1517899 eed non-coding downstream 37829 12275214 ~ 12278588 (-)
G1517933 NA non-coding upstream 27077 12345806 ~ 12346032 (-)
G1517935 NA non-coding upstream 40641 12359370 ~ 12360832 (-)
G1517948 tuba8l2 non-coding upstream 77089 12395818 ~ 12402098 (-)
G1517951 NA non-coding upstream 85859 12404588 ~ 12405881 (-)
G1517955 NA non-coding upstream 94903 12413632 ~ 12415091 (-)
G1517902 NA other downstream 30785 12285078 ~ 12285632 (-)
G1517822 LOC106575686 other downstream 293977 12020772 ~ 12023228 (-)
G1517784 NA other downstream 368072 11947565 ~ 11948345 (-)
G1518019 LOC106575703 other upstream 264999 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 587482 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 652924 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 1066027 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1420722 13739451 ~ 13741567 (-)

Expression


Co-expression Network