G1517955


Basic Information

Item Value
gene id G1517955
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12413632 ~ 12415091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737707
AATATCTAAAATTCCTGGATGGGCTGAATTAGGCTACAAACAGTCCGAAACAGCCAGCAGCCATTTATAGTTCCAGTACATTCTACATTGTTCCACTGAAATCATCAATAACATCTGTATTCCAACTTCATTTGCTTATTTAGAACATGTTCATATAGCATATACATGGACAAATAAATCATTGCTCcttaaatagacacacacacacacacaaataacagCTTAAAAAAAGAAACCATTAAAAAGTTAACTGAGCAAAACCTGCTGAGACTTAAAACCAGATTATCTTATCTTCCTGTTGACACTCAAAACAGAATCTTGTGAGGTATTGCCAAACACATACAGGCCTAAATGAACATGTCATGAATGGAAAATAGAGAATTGTTACAGTATAGCATTATGTGATGATAACACATAAATACAGTTAGGATGGACTTGAAAGAAGTTCAAGGATGAAtcaagcagacctgggttcaaaataCTATTTCAGGTATTTCAATTGCTTTTCGATACAtttcaaaacaatcagacaaccTATATTTGAAAAAACAAGTAGAtgaatattggaatgtatttggaaatacacttggaaatGATGTTAAAACACTCAAATACACTCCCAtgcatttaacccaggtatttgaaaatagtatttgaaaacaCTTTCAAATACAATTTGGTCGACTATTTGGTCTTTACAAATAATCATTCAAGtactcaaataaataaataacatttgagctgtgtatttgaaaatactcaaatatacagaaaaagtatttaaataacaaatactcatgtattgaacccaggtctggaatCAAGTTATTAAAATCCCTTTGAAGCTGATATAAGATATGGCCGAGTACATTTCCATGGAAACCGTCTGTCTGGAATTTACCATAGGTCCTTTTCCTGGTCCGGGGCCCCCTTCAACCCTAGTGTCTGATGGTAGTTTAACCCATGGGGTTTCCTATTCACTAGCAGTCATAAAATGGCTCCACCCAAATCTCAATTTCCCCAAGGTGAGCTGGATGTGGAGTTGACCGACACTGTGTCGGAGCATATTGTTGCACATGCATATAGAGGACAGTGAGGACTTGTGACGTAAGTCTATATGGTTTCAACTGCACaatagcaggtgtgtgtgtatggggtagGATCCCCTGAGCTTCTAAGACTAGAGGAAAACGACGAGGTCAGGGTCGCCATTACAACAGTCCAGAGGTCATAAAGTTCAAAGTTCATCACCCACAGATGttggaaccagagaggaaccaggcttgcCATGGTTCCCCGATCAGGAGCATCATACCATATTGGTCTGTGTGTTGGGGCTGGAACATGTCATGTCCTGTATctggtccaggatccagttgacgTCAGGTCTTTCCTGGGGGTTGGACACCATGATGGAGCTCAGCAGGTTCTGCA
>TU1737706
AATATCTAAAATTCCTGGATGGGCTGAATTAGGCTACAAACAGTCCGAAACAGCCAGCAGCCATTTATAGTTCCAGTACATTCTACATTGTTCCACTGAAATCATCAATAACATCTGTATTCCAACTTCATTTGCTTATTTAGAACATGTTCATATAGCATATACATGGACAAATAAATCATTGCTCcttaaatagacacacacacacacacaaataacagCTTAAAAAAAGAAACCATTAAAAAGTTAACTGAGCAAAACCTGCTGAGACTTAAAACCAGATTATCTTATCTTCCTGTTGACACTCAAAACAGAATCTTGTGAGGTATTGCCAAACACATACAGGCCTAAATGAACATGTCATGAATGGAAAATAGAGAATTGTTACAGTATAGCATTATGTGATGATAACACATAAATACAGTTAGGATGGACTTGAAAGAAGTTCAAGGATGAAtcaagcagacctgggttcaaaataCTATTTCAGGTATTTCAATTGCTTTTCGATACAtttcaaaacaatcagacaaccTATATTTGAAAAAACAAGTAGAtgaatattggaatgtatttggaaatacacttggaaatGATGTTAAAACACTCAAATACACTCCCAtgcatttaacccaggtatttga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737707 False 1434 lncRNA 0.39 2 12413632 12415091
TU1737706 True 644 lncRNA 0.33 2 12414422 12415091

Neighbor

gene id symbol gene type direction distance location
LOC110516060 LOC106575774 coding downstream 32639 12354052 ~ 12380993 (-)
LOC110497022 LOC106574871 coding downstream 71302 12330934 ~ 12342330 (-)
ck073 ck073 coding downstream 125530 12281631 ~ 12288102 (-)
LOC110495544 LOC106575695 coding downstream 141444 12260777 ~ 12272188 (-)
LOC118936562 LOC106594175 coding downstream 161083 12250356 ~ 12252549 (-)
LOC110528732 LOC105019714 coding upstream 54993 12470084 ~ 12506726 (-)
LOC110527216 nud15 coding upstream 137577 12552668 ~ 12553871 (-)
LOC118941039 NA coding upstream 156631 12571503 ~ 12583644 (-)
LOC110495529 LOC106575665 coding upstream 196923 12612014 ~ 12616159 (-)
LOC118941036 NA coding upstream 250755 12665846 ~ 12677668 (-)
G1517951 NA non-coding downstream 7751 12404588 ~ 12405881 (-)
G1517948 tuba8l2 non-coding downstream 11534 12395818 ~ 12402098 (-)
G1517935 NA non-coding downstream 52800 12359370 ~ 12360832 (-)
G1517933 NA non-coding downstream 67600 12345806 ~ 12346032 (-)
G1517924 NA non-coding downstream 94903 12316417 ~ 12318729 (-)
G1517963 NA non-coding upstream 18623 12433714 ~ 12433935 (-)
G1517965 NA non-coding upstream 20515 12435606 ~ 12435967 (-)
G1517970 NA non-coding upstream 30199 12445290 ~ 12445526 (-)
G1517987 NA non-coding upstream 83955 12499046 ~ 12499805 (-)
G1517998 NA non-coding upstream 121268 12536359 ~ 12536584 (-)
G1517902 NA other downstream 128000 12285078 ~ 12285632 (-)
LOC110512633 LOC106575771 other downstream 167889 12240234 ~ 12245743 (-)
G1517822 LOC106575686 other downstream 391192 12020772 ~ 12023228 (-)
G1517784 NA other downstream 465287 11947565 ~ 11948345 (-)
G1518019 LOC106575703 other upstream 168637 12583728 ~ 12600331 (-)
LOC110495512 LOC106574713 other upstream 491120 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 556562 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 969665 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1324360 13739451 ~ 13741567 (-)

Expression


Co-expression Network