G1518019 (LOC106575703)


Basic Information

Item Value
gene id G1518019
gene name LOC106575703
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12583728 ~ 12600331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1737778
GTTGAGACTCGTGCCCTTCCACAaatcctgtttttttttatttccatATTATTGTTACATTGATACAGCCAGGCCTAATTCCATACATTACCACTGTAAATGATCTGTACTTTCTCAAGTAGGCCTAAATGACGTGCAATTAAAGATGTAATCCATAACATTTGTTCTCTAAGGGAATTGATCATCACGTTTACAGGAGTCACACTATATATTATCACATGTTCATAGTTGGGCCAAATGTAAATAGTCTTCATTTCTGGAATGAGGTCTTGCAAAGGGACATGGATCTTGAAAAGATTAGGAAACATAAAACACAAGATGTTAGTTGTTGATTTGACCTGTGATGATTACTGTAATTACAATGACGATATTAATGAATGCTTAAACCTACTGGAACCTACTTTTGCCTGAGATGAGCCCCATCATGTAAGAAAACACCACACAAGGGCAGTTGCAGCATAAAGACAGTAACACCTGGAAAGAAAATAATGATTTAAAAGTGACCTGTGCTTCAGAGATACGCTGCAGTTCTGACTTTTCTTTAAATAGCTACATTATGGCAGATATCTCCCCAACACTAGACAACAAGATATTTAATTagcactgaacaaaaacataaacccAACATatagtgttggtccaatgtttcatgagctgaaataaaatatcacagaaatgttccatatgcacaaaaagcttatttctctcagattttgtgcacaaatttgtcgacatcccagttagtgagcatttctccattgccaagataatccatccacctgacaggtgtggcatgtcaagaagctgattaaaaagcttgatcattacacagccggggacaataaaacaccactttaaaatgtgcagttttatcacataacacaatgccccagatgtctcaagttttgagggagtgtgtaattgtcatgctgactgcaggaatgtccaacagagctgttgccaaagagttgaatgttcatttctctaccaaaagccgcctcaaatgttgttttagagaatttggcagtacgtccaactggcctaacaaccgcagactacgtgtaaccacacaagcccagaacctccacatccggcatcttcacctgcgggatcgtctgaaaccagccacccaGGCAGCTgaggaaactgtgggtttgcacaaccaaagaatttctcagggaagctcatctgcgtgctcgtcgtcctcaccagggtcttggccttactgcagttcagcgtcgtaaacgacttcagtgggcaaatgcttaccttcaatggccactctgttcacattgtgaacagagtgccccatggtggcggtgaggttatggtatgggcaggcataagctatggacaatgaacacaattgcattttatcgatggcaattttaatgcacaaaTATATCGTGAggtgatcctgaggcccattttgtgccgttcatccaccgccatcatgTTTCAGCACAATGCACTGCCCCATTTCGCAAGGATCTGGACACAATTCGTGGAAGCTGAAAAtgacccagttcttccatggcctgcatactcaccagacatgtcacacattgagcatgtttgggggggctggatcaacatgtacaacagcgtgttccagttcccgcaaatatccagcaacttcgcacagaggagagggacaacattccacagaccacaatcaactctatgtgaaggagatgtgtcacgctacatgaggcaaatggtggccacaccagattcggactggttttctgatccacgcccctacctctTTTTTTaatggtatctgtgaccaaccatCCATAGATGAttgtttaatgaatttatttcaattgacttatttccttatatgaactggaaatcagtaaaaatctttgaaattgttgcacgttgcgtttatattcttgttcagtaTAGTAGTTGCTGATGTATGGTTACTTTTTATCATACCATGGCAGCGTTTAGAATCCAAGCTAGACAGTCACAATTTCTGGCCTGTAAAAAAAGGAGAGGAAAAATTAATACCGTACATCAAATAGAGAAATACTGTATTCAAAATGATGATTAATTGATACCATACCACAGGATCTATGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGTGAGGACAGTCCAGTAGTCCCTGGCTCTCATGGAACAGACAGTCCACTGTGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGCGAGGACAGTCCAGTAGTCCCAGTCTCTCATGGAACAGACAGTCCACTGTGAGTATTACATCACTTCTGGTCACTAGTCTGCTGCTGTAAGGTACAGTGTAGTCTGGGTTGAAGGTGTGATGCAGCACTACCAGAATGACATCTTTACCCACTGTCAAGAAAGAGAATGTGGGAATACGTCAAAATTAACCTATAAGCCTCTCAAATAAACAATTTAGTCATGTCATTCATGCCGTTGGTACATTTGAGGAAAACTGGTGTGGAAAGAGAATATCTAGTATAGAAGGAAATAACATTGTTTAGGAAGTCATATTTGGGATGAGTTACTGTACTTGGAATCTGTTGCAGTGCTGCTTCAATATCAGTCCCGGCGCGGGAGACGATGGGACAGAAAGCCATGATGACATCACTCTCCACTGGAGACTTGACTTCCGTAAAACATCTTGTGGTGTTGTTGAGTCGTCTCATAAACTGAATATGAGTTTCCAAAGTATTGCCAGTCTCAACTGTGTAGTACTTCATATTGTGTGCAACT
>TU1737781
GTTGAGACTCGTGCCCTTCCACAaatcctgtttttttttatttccatATTATTGTTACATTGATACAGCCAGGCCTAATTCCATACATTACCACTGTAAATGATCTGTACTTTCTCAAGTAGGCCTAAATGACGTGCAATTAAAGATGTAATCCATAACATTTGTTCTCTAAGGGAATTGATCATCACGTTTACAGGAGTCACACTATATATTATCACATGTTCATAGTTGGGCCAAATGTAAATAGTCTTCATTTCTGGAATGAGGTCTTGCAAAGGGACATGGATCTTGAAAAGATTAGGAAACATAAAACACAAGATGTTAGTTGTTGATTTGACCTGTGATGATTACTGTAATTACAATGACGATATTAATGAATGCTTAAACCTACTGGAACCTACTTTTGCCTGAGATGAGCCCCATCATGTAAGAAAACACCACACAAGGGCAGTTGCAGCATAAAGACAGTAACACCTGGAAAGAAAATAATGATTTAAAAGTGACCTGTGCTTCAGAGATACGCTGCAGTTCTGACTTTTCTTTAAATAGCTACATTATGGCAGATATCTCCCCAACACTAGACAACAAGATATTTAATTagcactgaacaaaaacataaacccAACATatagtgttggtccaatgtttcatgagctgaaataaaatatcacagaaatgttccatatgcacaaaaagcttatttctctcagattttgtgcacaaatttgtcgacatcccagttagtgagcatttctccattgccaagataatccatccacctgacaggtgtggcatgtcaagaagctgattaaaaagcttgatcattacacagccggggacaataaaacaccactttaaaatgtgcagttttatcacataacacaatgccccagatgtctcaagttttgagggagtgtgtaattgtcatgctgactgcaggaatgtccaacagagctgttgccaaagagttgaatgttcatttctctaccaaaagccgcctcaaatgttgttttagagaatttggcagtacgtccaactggcctaacaaccgcagactacgtgtaaccacacaagcccagaacctccacatccggcatcttcacctgcgggatcgtctgaaaccagccacccaGGCAGCTgaggaaactgtgggtttgcacaaccaaagaatttctcagggaagctcatctgcgtgctcgtcgtcctcaccagggtcttggccttactgcagttcagcgtcgtaaacgacttcagtgggcaaatgcttaccttcaatggccactctgttcacattgtgaacagagtgccccatggtggcggtgaggttatggtatgggcaggcataagctatggacaatgaacacaattgcattttatcgatggcaattttaatgcacaaaTATATCGTGAggtgatcctgaggcccattttgtgccgttcatccaccgccatcatgTTTCAGCACAATGCACTGCCCCATTTCGCAAGGATCTGGACACAATTCGTGGAAGCTGAAAAtgacccagttcttccatggcctgcatactcaccagacatgtcacacattgagcatgtttgggggggctggatcaacatgtacaacagcgtgttccagttcccgcaaatatccagcaacttcgcacagaggagagggacaacattccacagaccacaatcaactctatgtgaaggagatgtgtcacgctacatgaggcaaatggtggccacaccagattcggactggttttctgatccacgcccctacctctTTTTTTaatggtatctgtgaccaaccatCCATAGATGAttgtttaatgaatttatttcaattgacttatttccttatatgaactggaaatcagtaaaaatctttgaaattgttgcacgttgcgtttatattcttgttcagtaTAGTAGTTGCTGATGTATGGTTACTTTTTATCATACCATGGCAGCGTTTAGAATCCAAGCTAGACAGTCACAATTTCTGGCCTGTAAAAAAAGGAGAGGAAAAATTAATACCGTACATCAAATAGAGAAATACTGTATTCAAAATGATGATTAATTGATACCATACCACAGGATCTATGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGTGAGGACAGTCCAGTAGTCCCTGGCTCTCATGGAACAGACAGTCCACTGTGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGCGAGGACAGTCCAGTAGTCCCAGGCTCTCATGGAACAGACAGTCCACTGTGAGTATTACATCACTTCTGGTCACTAGTCTGCTGCTGTAAGGTACAGTGTAGTCTGGGTTGAAGGTGTGATGCAGCACTACCAGAATGACATCTTTACCCACTGTCAAGAAAGAGAATGTGAGAATACTCAAATAAACAATGTAGTAATGTAATTCATGCCTTTGGTACATTTTGAGTAAATCTGGTGTGGAAAGAGAATatctggtatagagggaaataacATTGTTTAGGAAGTCATATTTGGGATGAGTTACTGTACTTGGAATCTGTTGCAGTGCTGCTTCAATATCAGTCCCGGCGCGGGAGACGGTGGGACAGAAAGCCATGATGACATCACTCTCCACTGGAGACTTGACTTCCGTAAAACATCTTGTGGTGTTGTTGAGTCGTCTCATAAACTGAATATGAGTTTCCAAAGTATTGCCAGTCTCAACTGTGTAGTACTTCATATTGTGTGCAACT
>TU1737782
GTTGAGACTCGTGCCCTTCCACAaatcctgtttttttttatttccatATTATTGTTACATTGATACAGCCAGGCCTAATTCCATACATTACCACTGTAAATGATCTGTACTTTCTCAAGTAGGCCTAAATGACGTGCAATTAAAGATGTAATCCATAACATTTGTTCTCTAAGGGAATTGATCATCACGTTTACAGGAGTCACACTATATATTATCACATGTTCATAGTTGGGCCAAATGTAAATAGTCTTCATTTCTGGAATGAGGTCTTGCAAAGGGACATGGATCTTGAAAAGATTAGGAAACATAAAACACAAGATGTTAGTTGTTGATTTGACCTGTGATGATTACTGTAATTACAATGACGATATTAATGAATGCTTAAACCTACTGGAACCTACTTTTGCCTGAGATGAGCCCCATCATGTAAGAAAACACCACACAAGGGCAGTTGCAGCATAAAGACAGTAACACCTGGAAAGAAAATAATGATTTAAAAGTGACCTGTGCTTCAGAGATACGCTGCAGTTCTGACTTTTCTTTAAATAGCTACATTATGGCAGATATCTCCCCAACACTAGACAACAAGATATTTAATTagcactgaacaaaaacataaacccAACATatagtgttggtccaatgtttcatgagctgaaataaaatatcacagaaatgttccatatgcacaaaaagcttatttctctcagattttgtgcacaaatttgtcgacatcccagttagtgagcatttctccattgccaagataatccatccacctgacaggtgtggcatgtcaagaagctgattaaaaagcttgatcattacacagccggggacaataaaacaccactttaaaatgtgcagttttatcacataacacaatgccccagatgtctcaagttttgagggagtgtgtaattgtcatgctgactgcaggaatgtccaacagagctgttgccaaagagttgaatgttcatttctctaccaaaagccgcctcaaatgttgttttagagaatttggcagtacgtccaactggcctaacaaccgcagactacgtgtaaccacacaagcccagaacctccacatccggcatcttcacctgcgggatcgtctgaaaccagccacccaGGCAGCTgaggaaactgtgggtttgcacaaccaaagaatttctcagggaagctcatctgcgtgctcgtcgtcctcaccagggtcttggccttactgcagttcagcgtcgtaaacgacttcagtgggcaaatgcttaccttcaatggccactctgttcacattgtgaacagagtgccccatggtggcggtgaggttatggtatgggcaggcataagctatggacaatgaacacaattgcattttatcgatggcaattttaatgcacaaaTATATCGTGAggtgatcctgaggcccattttgtgccgttcatccaccgccatcatgTTTCAGCACAATGCACTGCCCCATTTCGCAAGGATCTGGACACAATTCGTGGAAGCTGAAAAtgacccagttcttccatggcctgcatactcaccagacatgtcacacattgagcatgtttgggggggctggatcaacatgtacaacagcgtgttccagttcccgcaaatatccagcaacttcgcacagaggagagggacaacattccacagaccacaatcaactctatgtgaaggagatgtgtcacgctacatgaggcaaatggtggccacaccagattcggactggttttctgatccacgcccctacctctTTTTTTaatggtatctgtgaccaaccatCCATAGATGAttgtttaatgaatttatttcaattgacttatttccttatatgaactggaaatcagtaaaaatctttgaaattgttgcacgttgcgtttatattcttgttcagtaTAGTAGTTGCTGATGTATGGTTACTTTTTATCATACCATGGCAGCGTTTAGAATCCAAGCTAGACAGTCACAATTTCTGGCCTGTAAAAAAAGGAGAGGAAAAATTAATACCGTACATCAAATAGAGAAATACTGTATTCAAAATGATGATTAATTGATACCATACCACAGGATCTATGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGTGAGGACAGTCCAGTAGTCCCTGGCTCTCATGGAACAGACAGTCCACTGTGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGCGAGGACAGTCCAGTAGTCCCAGGCTCTCATGGAACAGACAGTCCACTGTGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGTGAGGACAGTCCAGTAGTCCCTGGCTCTCATGGAACAGACAGTCCACTGTGTCAAACTTCTGCCTAATATTTCTGACTGCTGCATCATTGCGAGGACAGTCCAGTAGTCCTCCCAGTCTCTCATGGAACAGACAGTCCACTGTGAGTATTACATCACTTCTGGTCACTAGTCTGCTGCTGTAAGGTACAGTGTAGTCTGGGTTGAAGGTGTGATGCAGCACTACCAGAATGACATCTTTACCCATTGGAATCTGTTGCAGTGCTGCTTCAATATCAGTCCCGGCGCGGGAGACGATGGGACAGAAAGCCATGATGACATCACTCTCCACTGGAGACTTGACTTCCGTAAAACATCTTGTGGTGTTGTTGAGTCGTCTCATAAACTGAATATGAGTTTCCAAAGTATTGCCAGTCTCAACTGTGTAGTACTTCATATTGTGTGCAACT

Function

NR:

description
uncharacterized protein LOC110527213 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1737778 False 2754 TUCP 0.42 2 12583728 12600331
TU1737781 False 2732 TUCP 0.42 2 12583728 12600331
TU1737782 True 2756 TUCP 0.42 3 12583728 12600331

Neighbor

gene id symbol gene type direction distance location
LOC118941039 NA coding downstream 11339 12571503 ~ 12583644 (-)
LOC110527216 nud15 coding downstream 29857 12552668 ~ 12553871 (-)
LOC110528732 LOC105019714 coding downstream 77002 12470084 ~ 12506726 (-)
LOC110516060 LOC106575774 coding downstream 202735 12354052 ~ 12380993 (-)
LOC110497022 LOC106574871 coding downstream 241398 12330934 ~ 12342330 (-)
LOC110495529 LOC106575665 coding upstream 11683 12612014 ~ 12616159 (-)
LOC118941036 NA coding upstream 65515 12665846 ~ 12677668 (-)
LOC110527208 LOC106575754 coding upstream 82778 12683109 ~ 12695620 (-)
LOC110527202 LOC106574654 coding upstream 229272 12829603 ~ 12833072 (-)
LOC110495527 LOC106575752 coding upstream 233311 12833642 ~ 12837832 (-)
G1517994 ipo5 non-coding downstream 17707 12562815 ~ 12566021 (-)
G1517981 NA non-coding downstream 28679 12554270 ~ 12555049 (-)
G1518000 NA non-coding downstream 33738 12542254 ~ 12549990 (-)
G1517999 NA non-coding downstream 45465 12538035 ~ 12538263 (-)
G1518044 NA non-coding upstream 51308 12651639 ~ 12653753 (-)
G1518076 NA non-coding upstream 104663 12704994 ~ 12705267 (-)
G1518082 NA non-coding upstream 118860 12719191 ~ 12719426 (-)
G1518095 NA non-coding upstream 147340 12747671 ~ 12747916 (-)
G1518134 NA non-coding upstream 281110 12881441 ~ 12882005 (-)
G1517902 NA other downstream 298096 12285078 ~ 12285632 (-)
LOC110495544 LOC106575695 other downstream 320659 12260777 ~ 12272188 (-)
LOC110512633 LOC106575771 other downstream 337985 12240234 ~ 12245743 (-)
G1517822 LOC106575686 other downstream 561288 12020772 ~ 12023228 (-)
LOC110527304 LOC106575687 other downstream 611408 11926474 ~ 11972660 (-)
LOC110495512 LOC106574713 other upstream 305880 12898791 ~ 12910954 (-)
LOC110513917 LOC106575727 other upstream 371322 12933662 ~ 13031321 (-)
bcor LOC106574692 other upstream 784425 13312628 ~ 13402659 (-)
G1518858 LOC106574768 other upstream 1139120 13739451 ~ 13741567 (-)
G1518991 NA other upstream 1370750 13971081 ~ 13972538 (-)

Expression


Co-expression Network