XLOC_003450 (inavab)


Basic Information

Item Value
gene id XLOC_003450
gene name inavab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24716837 ~ 24756816 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006752
TGGATAAATAATATCCCATGATAATGCGCTGCGTGGAGTTTTGACGACCCTGCAGTGGTTTTGCTGTTATGACGACAAAAGGAACTTGTGAAGGAAGTGAAAACCGTGGCTTTGAATAACGCTTGACAAACAGTCATGGAAGGGAAAGAGGAGATCAGTGATACCGATAGTGGGGTTATTTTGCATTCTGGTCCGGACAGCCCCACCACAATGATGAAGGATGTAAAAACTCACACTCGGGTCATGAAACTCAAGCAGCAATCTCTGGAAGACAGGCTGAAAATGTGCTTAGTGGAGCTCAAGAAACTCTGCATCAGAGAGGCTGAGCTCACAGGACATTTGTCCTCAGTCTATCCTCTGTTACCTGGAGAAAAGCCTCCTCAGATTCGCCGGCGCATCGGAGCTGCATTTAAATTAGACGAACCAAGCATCCTTCACAGAACTGAGAACTCTGCGCTGAGCTCGGTGGAGGCTGATTTGGCTCTTCAGCAGCAGATCTATGTGGCGGCGCAGAGACTGTGCCAGGAGGAGCATCTCAGTAAGGGGGTGAAGAGGAGTCGACTGCAGCAGTACCAGCGAGAGGAGAGGAAACTCAAAGACCTTCAGGAGGCCGTTTTCAGACTGAGACTGGAACACGGACGATCCTCACCGCGGCCTGGCATAATCACACAGAGAGgtgCTTCAGATGACAGCTCCTTGTCAGACTCAGCTGTGCTTGAAGAGGATGAACTGTCCTCCCAGCTCTCCTCAGAGCCTCCCTCAGCTCCTGCTGTCGACTTTTACCCTCCGCCTATAGTCATCTCTCATGTTGC
>TCONS_00006753
GTCTACAAGAGGTGTGACGCCGTGATatctctccctcacacacacacacacacacacactgaggtaTGTGCAAGACGCACCCAGGTTCATTTCACAGTCCAAACTCCTACCGTTGCTCATCCAGAGTCAAGAGTGCAGTGTGGAACTAGACGTCCTATGGAAATCAACTGATTTTGTTTACCGGATACACTTTTAGTGGAATTAATGTGTTACAATATGAACTTGTGAAGGAAGTGAAAACCGTGGCTTTGAATAACGCTTGACAAACAGTCATGGAAGGGAAAGAGGAGATCAGTGATACCGATAGTGGGGTTATTTTGCATTCTGGTCCGGACAGCCCCACCACAATGATGAAGGATGTAAAAACTCACACTCGGGTCATGAAACTCAAGCAGCAATCTCTGGAAGACAGGCTGAAAATGTGCTTAGTGGAGCTCAAGAAACTCTGCATCAGAGAGGCTGAGCTCACAGGACATTTGTCCTCAGTCTATCCTCTGTTACCTGGAGAAAAGCCTCCTCAGATTCGCCGGCGCATCGGAGCTGCATTTAAATTAGACGAACCAAGCATCCTTCACAGAACTGAGAACTCTGCGCTGAGCTCGGTGGAGGCTGATTTGGCTCTTCAGCAGCAGATCTATGTGGCGGCGCAGAGACTGTGCCAGGAGGAGCATCTCAGTAAGGGGGTGAAGAGGAGTCGACTGCAGCAGTACCAGCGAGAGGAGAGGAAACTCAAAGACCTTCAGGAGGCCGTTTTCAGACTGAGACTGGAACACGGACGATCCTCACCGCGGCCTGGCATAATCACACAGAGAGgtgCTTCAGATGACAGCTCCTTGTCAGACTCAGCTGTGCTTGAAGAGGATGAACTGTCCTCCCAGCTCTCCTCAGAGCCTCCCTCAGCTCCTGCTGTCGACTTTTACCCTCCGCCTATAGTCATCTCTCATGTTGCTCCTCATGCACCTGTGGGCCCCTCATACCGGCCCCTTCAGCCCCTTTCCTATCAAACCCCTCCCCAATCCCTGGAGAGCCTGCACACCTGCCAGAGTCCAGAGAACGACCCTGCACCCATCCAAAACTCACCCTGGACAGAGAGCAGTTTAGACCAGCCCTATCAGAAAATGAAAAGATCTCCCTCTGTCAAATCCAGTCCTTCTACCCCCACGTTGCCTTCTATAGAGGTCTGTCTTGCGGATGCTGGAATCCCATTGCAGATACCTACACATGCtgccctgaaacacacacagtcctgcaGCGCACCTTCCACTCCAGAGATGCACCTGCGCAGAAGACAATCCCTCAGACTTCCTATCACCGAACCCAACCATTATGAGCCCGAGCGGGATCGTGGGCACTTGAAGGGCCCCAGAAGACGCTTGACGGAATTCGCAGTGTCATCATCCGAATATTCCTCGATGCGACTGAATGTAGGAAACCCTGTATACTACTCCAGCTCAGAAGACAGCAACTCTGAGCACTCTTTCCAGTCGTATGCCAGCTCGCCCTGCCAGGAGCACCCAGGAGAACTTCCATGGACTCACCAATCCCAATACGGCTACCAATACGCCAGCCTCGCCGACAACCAAGTGCCACAAAGATGCTCACCTACGCACTTCTACAAGAACACTCAATACCAATCCTCACCTAGTTTCACAAGGGGCTACATAGAGGACGGATGGGGTCATGCTTTAGAAATGGACAGCGGGAGGTCGTATGTTAACCACCAGGCTCCTGTTTATTCTTCCAATGGTCACTATGAGTATTACTGTGAGGCTCTGCCATCGCAGCAACGGAGTTGTAGGTTGTTACCCGCCCATGTGAAACTGTCTCGGGCCCCTTCACTCAGAGAGTATCCTCATCACCCCAGCCGAGGCCTGCCCAGGCAGGTTGTGTCAGAGGAACTCAAATCATGGCATCAACGCAGCCAATTTCGACCGCCTCGACCACAATCGCTGGATCGGAACAGACAAGGAGCGCTCCGTATCCGAAATGTGCCTGGGCAAGAGTCCCCACTTTCACTTTCCCAACACCACAGGTACCAGGAACAACAGGTCGTATTGAGGACTCCAGACAGGTTGTATGAGGATGAATCAGAGGTTGCCAGTCAAGTGTGAAACTACCAAGATCCTTTAAAgaagtagagagagagagagtcctatttattcagtaatttattgaGCTGATGGACTAGAGTGTAgacttttttaattatatatgtgtatatgggAGTGTATGAGTTGTACTGTGAAAGACAATGTTTtatagactttttatagcagattaaCTCACTTATGGATTGTTTTGTACgattaaataaatctaatttgttACTAAGTGTGTTTTTACAATAGTGTTTGttgatactaaaataaaataaagttttaaaatta

Function

symbol description
inavab Predicted to be involved in adherens junction maintenance and positive regulation of protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in inflammatory bowel disease 29. Orthologous to human INAVA (innate immunity activator).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-190 Predicted to be involved in adherens junction maintenance and positive regulation of protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in inflammatory bowel disease 29. Orthologous to human INAVA (innate immunity activator).

Ensembl:

ensembl_id ENSDARG00000070571

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006752 False 812 mRNA 0.51 7 24716837 24744032
TCONS_00006753 True 2387 mRNA 0.49 10 24729346 24756816

Neighbor

gene id symbol gene type direction distance location
XLOC_003449 gpr25 coding upstream 12400 24703108 ~ 24704437 (+)
XLOC_003448 syt6b coding upstream 52806 24620742 ~ 24664031 (+)
XLOC_003447 BX072564.1 coding upstream 135723 24580579 ~ 24581114 (+)
XLOC_003446 rbm39a coding upstream 360744 24339362 ~ 24356093 (+)
XLOC_003445 rem1 coding upstream 384785 24313931 ~ 24332052 (+)
XLOC_003451 rnpep coding downstream 2151 24758967 ~ 24783118 (+)
XLOC_003452 cyb5r1 coding downstream 29562 24786378 ~ 24799675 (+)
XLOC_003453 adipor1a coding downstream 43340 24800156 ~ 24815193 (+)
XLOC_003454 rabif coding downstream 58851 24815667 ~ 24817637 (+)
XLOC_003455 kdm5ba coding downstream 62508 24819324 ~ 24851464 (+)
XLOC_003369 CR854846.2 misc upstream 8593755 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 12004841 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 12022574 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 12031238 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 12036809 12679732 ~ 12680028 (+)
XLOC_003442 NA non-coding upstream 406192 24120291 ~ 24310645 (+)
XLOC_003444 AL831791.1 non-coding upstream 537899 24178823 ~ 24178938 (+)
XLOC_003443 NA non-coding upstream 539186 24176418 ~ 24177651 (+)
XLOC_003441 FP102969.1 non-coding upstream 565620 24116083 ~ 24151217 (+)
XLOC_003463 NA non-coding downstream 302646 25059462 ~ 25060098 (+)
XLOC_003466 NA non-coding downstream 425041 25181857 ~ 25228195 (+)
XLOC_003467 NA non-coding downstream 499996 25256812 ~ 25266235 (+)
XLOC_003487 NA non-coding downstream 1072554 25829370 ~ 25830337 (+)
XLOC_003488 CR318604.1 non-coding downstream 1321131 26077947 ~ 26078061 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_02643806_02653170 NA coding CI01000306 null 2643806 ~ 2653422 (+)