G1519532


Basic Information

Item Value
gene id G1519532
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14489696 ~ 14492566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1739564
CTTTAATTAACATTGCAGGTacataataaaaaatgaaatgaatCAGAAACAGGAGAGACAACAGAACCGTAATCTTGTCTCAAAATGGTGAAAGTGCCTGGAATAATTCTGTGCTATATATTATTAATTATGATCATCATTAATATCATTATTATGATTACCAGAAAGGTTCATAAAACAAGTTTGCCACTCACTCTGAAAATGCAAacttattttttatgaatgtggCTAGATTGTCTTCATCTTATTATCATTTTTGATTTATATACACAATGTCATAGAATACAAGAAATCCACACCTTAAAGGAGCTCTGTCTTGAATGTATCAAACATTACTGTGTTTTCTGTTGGGTCGGGCAGGTATGACAGTTGGAAATTGACGTTGATCTCAGTGATATAACAAGCAGCCAACAGAGTACAGTACATTGAAGAAAAATACCAACACTTTGAAAAGTTAAACCAAAGGGGAATTGAAAAAGCAATCATTTTTGCAGACCGAGGGGGACATAGACATCTCTTACAGAgtttactcattgtgtataggtTAATAATTTGCATAATGTGTGGCACTACAAGGGACTGAATACACTGCCTCACTGTTTCTGTTTAGAAGCTGCTAGCACTATGAAGTATCAATAAAACAATGTTACGATATCAGATATTACAGAACACCCGTGTCGGATCCCGTAAATGATCGTATCTTACTTCATAGGGCCTCACAAGAACTATGTATGAAATGATTGTGGATTGTATGAGAGCACagtctctcactttctttctttctgaggTTCCCTTGGAGACGGTTAACATCAGCGTAACCACGGCAACGTTATAGGGACATGCGTTGTGTCAGGACCGACCCAACACAGGCCTAATCTCCCCACTAAAGCACCTCCCAACCAGGCTTTATCAAGTCCTGGTAAAAAACTACGTTGGGGTCTTTGAGTAGCTCTTATTGTTGCTTAACTGGACTTCATGACATCATATTTTGGTCAATCTGAAACTAACCAAAAAACTTGGTAAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAATGTGGATCATGTGGTGTGGATTTCAGATCTTTTTTCTTCACAAGCACAATTTTAGCTTTGGTCTCACTTGCTTGAAGAATAATGAGGATAATCTTGCCTTTTCCCGTACCACTACGGACCATTGGATATTTGAAGGGGTTTAAGTTGAATTTCAGAGGAATCAAAATGGATGTGCATTTATTTGTCACTATGTGTGGAGATACATTTCTCTTTTGTGAAACTCCATGATTTGCTCCTGTATTTTGGTCCGTTTGACAGACTGTCACATGGTATGCTAGACATTTCTTCTTCTAGGAACATATGACAACAACACTCTGAACATGTCTTGGAAGTCAACTGTGTTCAGTGTGTCGTCTTTTCAAAATGGCTGCTGTCCTTCTCCATAGAAATCAGGGAGGCACTACGTCGAGGTTATCTGGTATTCATGTGCGGTGGGGTAATGAAGATACTTCTCACAAATCTGCTTTGATGAATGGTTTCGAGTGTGAACAGTGTTTCTTATTTGTAAATACATTGACATATATCATAGGTTGAAAACATCTAGTTACTATGCACACTCCTCTGTTATGGAAAAGTCTTCGAAACACaaatatacacccccccccccccacccaacaaTGATATTAGGACTTGATGAAAACATCtcaaattattttatattttttcatCTTTCCACTAAGATAAGACATTTAGTGAAGGACTCAAACATCCACTTTGTCTGCTATGCAATTAGGGAACTGCATAGCAAAATAATGTAGAAAACAGAATGCATGTTACTCTATTTCTGTCATTAGTGGGATGACATGTGAATACGTATGTACTTCCAAGCAAATATTTTTGTTACAAAAATATACTTTCTCATAAAATAATACACATAGTTGTTTTTAGGGTGATATATGTCTCTGTTAAGCTGAACAGAAAGGCTGTCTTTTCAAAAGAGCATGTCACTATGTTTGCGAGAGCTGCAACACTTGCACACCAAGTCTAGCACCAGTCTCTATAGTGTCCTGATGGGTCGGTTCATCTATTCATATCTTGCATACTCCCAGGCCTCTTCATCTGTTGCATAATCTAGTTTTGTTTAATAAGAGTCCCAAATAAAAGAAGATTCCATCTATGTAACCAGGACAACAAAATGACATTTTCTTTCGAATGAAACATCAAAACTTTCCCGCTACAATGCCATAACTGTTCAAAAACATAGAGttcaaaccaccagtaccactacaagtccagatcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtc
>TU1739566
caacagaatggtagAATGGTGTGGGTATATATCGGTCATTAAACATATTCATGCAAGTAGAACGCTGATTGGCCCGCTCACCCTcctctagaccgctgattggccagctcttCCTCAGGGAGATTACATCATgctctatgaggaaatagcaagctGTTTTTAAACTatttgagatacaagtttgaggaGAGGTTTTTTAAGTGCTTTTTTCCccctccaatttatgctttggccacaactACGAGTATACGAGGCAACAACATTATTTagatatgagttaacagaatattaacttttaaaagtgaAATTTACTTTAAATGAAAATCTACAATTGCAAACAGCATTTGATTTGGTGTCCCATCATAACAAGACTGTTGATGTCAAGATGCAAGTAGAGAGGTCTAAAGAACAattattaaatgtgtttttattattaataataatagtatCTCTTTAATTAACATTGCAGGTacataataaaaaatgaaatgaatCAGAAACAGGAGAGACAACAGAACCGTAATCTTGTCTCAAAATGGTGAAAGTGCCTGGAATAATTCTGTGCTATATATTATTAATTATGATCATCATTAATATCATTATTATGATTACCAGAAAGGTTCATAAAACAAGTTTGCCACTCACTCTGAAAATGCAAacttattttttatgaatgtggCTAGATTGTCTTCATCTTATTATCATTTTTGATTTATATACACAATGTCATAGAATACAAGAAATCCACACCTTAAAGGAGCTCTGTCTTGAATGTATCAAACATTACTGTGTTTTCTGTTGGGTCGGGCAGGTATGACAGTTGGAAATTGACGTTGATCTCAGTGATATAACAAGCAGCCAACAGAGTACAGTACATTGAAGAAAAATACCAACACTTTGAAAAGTTAAACCAAAGGGGAATTGAAAAAGCAATCATTTTTGCAGACCGAGGGGGACATAGACATCTCTTACAGAgtttactcattgtgtataggtTAATAATTTGCATAATGTGTGGCACTACAAGGGACTGAATACACTGCCTCACTGTTTCTGTTTAGAAGCTGCTAGCACTATGAAGTATCAATAAAACAATGTTACGATATCAGATATTACAGAACACCCGTGTCGGATCCCGTAAATGATCGTATCTTACTTCATAGGGCCTCACAAGAACTATGTATGAAATGATTGTGGATTGTATGAGAGCACagtctctcactttctttctttctgaggTTCCCTTGGAGACGGTTAACATCAGCGTAACCACGGCAACGTTATAGGGACATGCGTTGTGTCAGGACCGACCCAACACAGGCCTAATCTCCCCACTAAAGCACCTCCCAACCAGGCTTTATCAAGTCCTGGTAAAAAACTACGTTGGGGTCTTTGAGTAGCTCTTATTGTTGCTTAACTGGACTTCATGACATCATATTTTGGTCAATCTGAAACTAACCAAAAAACTTGGTAAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAATGTGGATCATGTGGTGTGGATTTCAGATCTTTTTTCTTCACAAGCACAATTTTAGCTTTGGTCTCACTTGCTTGAAGAATAATGAGGATAATCTTGCCTTTTCCCGTACCACTACGGACCATTGGATATTTGAAGGGGTTTAAGTTGAATTTCAGAGGAATCAAAATGGATGTGCATTTATTTGTCACTATGTGTGGAGATACATTTCTCTTTTGTGAAACTCCATGATTTGCTCCTGTATTTTGGTCCGTTTGACAGACTGTCACATGGTATGCTAGACATTTCTTCTTCTAGGAACATATGACAACAACACTCTGAACATGTCTTGGAAGTCAACTGTGTTCAGTGTGTCGTCTTTTCAAAATGGCTGCTGTCCTTCTCCATAGAAATCAGGGAGGCACTACGTCGAGGTTATCTGGTATTCATGTGCGGTGGGGTAATGAAGATACTTCTCACAAATCTGCTTTGATGAATGGTTTCGAGTGTGAACAGTGTTTCTTATTTGTAAATACATTGACATATATCATAGGTTGAAAACATCTAGTTACTATGCACACTCCTCTGTTATGGAAAAGTCTTCGAAACACaaatatacacccccccccccccacccaacaaTGATATTAGGACTTGATGAAAACATCtcaaattattttatattttttcatCTTTCCACTAAGATAAGACATTTAGTGAAGGACTCAAACATCCACTTTGTCTGCTATGCAATTAGGGAACTGCATAGCAAAATAATGTAGAAAACAGAATGCATGTTACTCTATTTCTGTCATTAGTGGGATGACATGTGAATACGTATGTACTTCCAAGCAAATATTTTTGTTACAAAAATATACTTTCTCATAAAATAATACACATAGTTGTTTTTAGGGTGATATATGTCTCTGTTAAGCTGAACAGAAAGGCTGTCTTTTCAAAAGAGCATGTCACTATGTTTGCGAGAGCTGCAACACTTGCACACCAAGTCTAGCACCAGTCTCTATAGTGTCCTGATGGGTCGGTTCATCTATTCATATCTTGCATACTCCCAGGCCTCTTCATCTGTTGCATAATCTAGTTTTGTTTAATAAGAGTCCCAAATAAAAGAAGATTCCATCTATGTAACCAGGACAACAAAATGACATTTTCTTTCGAATGAAACATCAAAACTTTCCCGCTACAATGCCATAACTGTTCAAAAACATAGAGttcaaaccaccagtaccactacaagtccagatcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtc
>TU1739565
CTTTAATTAACATTGCAGGTacataataaaaaatgaaatgaatCAGAAACAGGAGAGACAACAGAACCGTAATCTTGTCTCAAAATGGTGAAAGTGCCTGGAATAATTCTGTGCTATATATTATTAATTATGATCATCATTAATATCATTATTATGATTACCAGAAAGGTTCATAAAACAAGTTTGCCACTCACTCTGAAAATGCAAacttattttttatgaatgtggCTAGATTGTCTTCATCTTATTATCATTTTTGATTTATATACACAATGTCATAGAATACAAGAAATCCACACCTTAAAGGAGCTCTGTCTTGAATGTATCAAACATTACTGTGTTTTCTGTTGGGTCGGGCAGGTATGACAGTTGGAAATTGACGTTGATCTCAGTGATATAACAAGCAGCCAACAGAGTACAGTACATTGAAGAAAAATACCAACACTTTGAAAAGTTAAACCAAAGGGGAATTGAAAAAGCAATCATTTTTGCAGACCGAGGGGGACATAGACATCTCTTACAGAgtttactcattgtgtataggtTAATAATTTGCATAATGTGTGGCACTACAAGGGACTGAATACACTGCCTCACTGTTTCTGTTTAGAAGCTGCTAGCACTATGAAGTATCAATAAAACAATGTTACGATATCAGATATTACAGAACACCCGTGTCGGATCCCGTAAATGATCGTATCTTACTTCATAGGGCCTCACAAGAACTATGTATGAAATGATTGTGGATTGTATGAGAGCACagtctctcactttctttctttctgaggTTCCCTTGGAGACGGTTAACATCAGCGTAACCACGGCAACGTTATAGGGACATGCGTTGTGTCAGGACCGACCCAACACAGGCCTAATCTCCCCACTAAAGCACCTCCCAACCAGGCTTTATCAAGTCCTGGTAAAAAACTACGTTGGGGTCTTTGAGTAGCTCTTATTGTTGCTTAACTGGACTTCATGACATCATATTTTGGTCAATCTGAAACTAACCAAAAAACTTGGTAAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAAAACAAGCCCTAATGTGGATCATGTGGTGTGGATTTCAGATCTTTTTTCTTCACAAGCACAATTTTAGCTTTGGTCTCACTTGCTTGAAGAATAATGAGGATAATCTTGCCTTTTCCCGTACCACTACGGACCATTGGATATTTGAAGGGGTTTAAGTTGAATTTCAGAGGAATCAAAATGGATGTGCATTTATTTGTCACTATGTGTGGAGATACATTTCTCTTTTGTGAAACTCCATGATTTGCTCCTGTATTTTGGTCCGTTTGACAGACTGTCACATGGTATGCTAGACATTTCTTCTTCTAGGAACATATGACAACAACACTCTGAACATGTCTTGGAAGTCAACTGTGTTCAGTGTGTCGTCTTTTCAAAATGGCTGCTGTCCTTCTCCATAGAAATCAGGGAGGCACTACGTCGAGGTTATCTGGTATTCATGTGCGGTGGGGTAATGAAGATACTTCTCACAAATCTGCTTTGATGAATGGTTTCGAGTGTGAACAGTGTTTCTTATTTGTAAATACATTGACATATATCATAGGTTGAAAACATCTAGTTACTATGCACACTCCTCTGTTATGGAAAAGTCTTCGAAACACaaatatacacccccccccccccacccaacaaTGATATTAGGACTTGATGAAAACATCtcaaattattttatattttttcatCTTTCCACTAAGATAAGACATTTAGTGAAGGACTCAAACATCCACTTTGTCTGCTATGCAATTAGGGAACTGCATAGCAAAATAATGTAGAAAACAGAATGCATGTTACTCTATTTCTGTCATTAGTGGGATGACATGTGAATACGTATGTACTTCCAAGCAAATATTTTTGTTACAAAAATATACTTTCTCATAAAATAATACACATAGTTGTTTTTAGGGTGATATATGTCTCTGTTAAGCTGAACAGAAAGGCTGTCTTTTCAAAAGAGCATGTCACTATGTTTGCGAGAGCTGCAACACTTGCACACCAAGTCTAGCACCAGTCTCTATAGTGTCCTGATGGGTCGGTTCATCTATTCATATCTTGCATACTCCCAGGCCTCTTCATCTGTTGCATAATCTAGTTTTGTTTAATAAGAGTCCCAAATAAAAGAAGATTCCATCTATGTAACCAGGACAACAAAATGACATTTTCTTTCGAATGAAACATCAAAACTTTCCCGCTACAATGCCATAACTGTTCAAAAACATAGAGttcaaaccaccagtaccactacaagtccagatcaaaccaccagtaccactacaagtccagttcaaaccaccagtaccactacaagtccagttcaaacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1739564 False 2420 lncRNA 0.38 1 14489696 14492115
TU1739566 False 2871 lncRNA 0.37 1 14489696 14492566
TU1739565 True 2371 lncRNA 0.38 1 14489745 14492115

Neighbor

gene id symbol gene type direction distance location
LOC110495488 LOC106575654 coding downstream 615134 13865384 ~ 13874562 (-)
LOC110495489 LOC106575650 coding downstream 656290 13803381 ~ 13833406 (-)
LOC110495490 LOC106574769 coding downstream 689690 13795409 ~ 13800006 (-)
LOC110495492 NA coding downstream 710865 13730360 ~ 13778831 (-)
LOC110497005 LOC106574767 coding downstream 777752 13707394 ~ 13711944 (-)
LOC110495482 LOC106575623 coding upstream 13661 14506227 ~ 14507592 (-)
LOC110495480 LOC108249344 coding upstream 38015 14530581 ~ 14578088 (-)
LOC110495477 fundc1 coding upstream 88396 14580962 ~ 14587615 (-)
LOC110495478 NA coding upstream 150509 14643075 ~ 14662564 (-)
LOC110497004 LOC106575641 coding upstream 179600 14672166 ~ 14740105 (-)
G1519531 NA non-coding downstream 101 14489378 ~ 14489595 (-)
G1519530 NA non-coding downstream 448 14486713 ~ 14489248 (-)
G1519524 NA non-coding downstream 10672 14478622 ~ 14479024 (-)
G1519521 NA non-coding downstream 20060 14465372 ~ 14469636 (-)
G1519514 NA non-coding downstream 36265 14453073 ~ 14453431 (-)
G1519535 NA non-coding upstream 3128 14495694 ~ 14495925 (-)
G1519570 NA non-coding upstream 22744 14515310 ~ 14515523 (-)
G1519574 NA non-coding upstream 32815 14525381 ~ 14525666 (-)
G1519575 NA non-coding upstream 34409 14526975 ~ 14527514 (-)
G1519987 NA non-coding upstream 43551 14536117 ~ 14536640 (-)
G1519529 LOC106575569 other downstream 3600 14484679 ~ 14486096 (-)
G1518991 NA other downstream 517407 13971081 ~ 13972538 (-)
G1518858 LOC106574768 other downstream 748129 13739451 ~ 13741567 (-)
bcor LOC106574692 other downstream 1087075 13312628 ~ 13402659 (-)
LOC110513917 LOC106575727 other downstream 1513255 12933662 ~ 13031321 (-)
G1520339 NA other upstream 783497 15276063 ~ 15277021 (-)
LOC110495442 LOC106574707 other upstream 1006342 15434412 ~ 15500787 (-)
G1521308 NA other upstream 1055310 15547876 ~ 15548483 (-)

Expression


Co-expression Network