G1519095


Basic Information

Item Value
gene id G1519095
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14490462 ~ 14492116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1739076
GTGTTTCGAAGACTTTTCCATAACAGAGGAGTGTGCATAGTAACTAGATGTTTTCAACCTATGATATATGTCAATGTATTTACAAATAAGAAACACTGTTCACACTCGAAACCATTCATCAAAGCAGATTTGTGAGAAGTATCTTCATTACCCCACCGCACATGAATACCAGATAACCTCGACGTAGTGCCTCCCTGATTTCTATGGAGAAGGACAGCAGCCATTTTGAAAAGACGACACACTGAACACAGTTGACTTCCAAGACATGTTCAGAGTGTTGTTGTCATATGTTCCTAGAAGAAGAAATGTCTAGCATACCATGTGACAGTCTGTCAAACGGACCAAAATACAGGAGCAAATCATGGAGTTTCACAAAAGAGAAATGTATCTCCACACATAGTGACAAATAAATGCACATCCATTTTGATTCCTCTGAAATTCAACTTAAACCCCTTCAAATATCCAATGGTCCGTAGTGGTACGGGAAAAGGCAAGATTATCCTCATTATTCTTCAAGCAAGTGAGACCAAAGCTAAAATTGTGCTTGTGAAGAAAAAAGATCTGAAATCCACACCACATGATCCACATTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTTACCAAGTTTTTTGGTTAGTTTCAGATTGACCAAAATATGATGTCATGAAGTCCAGTTAAGCAACAATAAGAGCTACTCAAAGACCCCAACGTAGTTTTTTACCAGGACTTGATAAAGCCTGGTTGGGAGGTGCTTTAGTGGGGAGATTAGGCCTGTGTTGGGTCGGTCCTGACACAACGCATGTCCCTATAACGTTGCCGTGGTTACGCTGATGTTAACCGTCTCCAAGGGAAcctcagaaagaaagaaagtgagagactGTGCTCTCATACAATCCACAATCATTTCATACATAGTTCTTGTGAGGCCCTATGAAGTAAGATACGATCATTTACGGGATCCGACACGGGTGTTCTGTAATATCTGATATCGTAACATTGTTTTATTGATACTTCATAGTGCTAGCAGCTTCTAAACAGAAACAGTGAGGCAGTGTATTCAGTCCCTTGTAGTGCCACACATTATGCAAATTATTAacctatacacaatgagtaaacTCTGTAAGAGATGTCTATGTCCCCCTCGGTCTGCAAAAATGATTGCTTTTTCAATTCCCCTTTGGTTTAACTTTTCAAAGTGTTGGTATTTTTCTTCAATGTACTGTACTCTGTTGGCTGCTTGTTATATCACTGAGATCAACGTCAATTTCCAACTGTCATACCTGCCCGACCCAACAGAAAACACAGTAATGTTTGATACATTCAAGACAGAGCTCCTTTAAGGTGTGGATTTCTTGTATTCTATGACATTGTGTATATAAATCAAAAATGATAATAAGATGAAGACAATCTAGccacattcataaaaaataagtTTGCATTTTCAGAGTGAGTGGCAAACTTGTTTTATGAACCTTTCTGGTAATCATAATAATGATATTAATGATGATCATAATTAATAATATATAGCACAGAATTATTCCAGGCACTTTCACCATTTTGAGACAAGATTACGGTTCTGTTGTCTCTCCTGTTTCTGattcatttcattttttattatgtACCTGCAATGTTAATTAAAGA
>TU1739077
GTGTTTCGAAGACTTTTCCATAACAGAGGAGTGTGCATAGTAACTAGATGTTTTCAACCTATGATATATGTCAATGTATTTACAAATAAGAAACACTGTTCACACTCGAAACCATTCATCAAAGCAGATTTGTGAGAAGTATCTTCATTACCCCACCGCACATGAATACCAGATAACCTCGACGTAGTGCCTCCCTGATTTCTATGGAGAAGGACAGCAGCCATTTTGAAAAGACGACACACTGAACACAGTTGACTTCCAAGACATGTTCAGAGTGTTGTTGTCATATGTTCCTAGAAGAAGAAATGTCTAGCATACCATGTGACAGTCTGTCAAACGGACCAAAATACAGGAGCAAATCATGGAGTTTCACAAAAGAGAAATGTATCTCCACACATAGTGACAAATAAATGCACATCCATTTTGATTCCTCTGAAATTCAACTTAAACCCCTTCAAATATCCAATGGTCCGTAGTGGTACGGGAAAAGGCAAGATTATCCTCATTATTCTTCAAGCAAGTGAGACCAAAGCTAAAATTGTGCTTGTGAAGAAAAAAGATCTGAAATCCACACCACATGATCCACATTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTGTTTTAGGGCTTTACCAAGTTTTTTGGTTAGTTTCAGATTGACCAAAATATGATGTCATGAAGTCCAGTTAAGCAACAATAAGAGCTACTCAAAGACCCCAACGTAGTTTTTTACCAGGACTTGATAAAGCCTGGTTGGGAGGTGCTTTAGTGGGGAGATTAGGCCTGTGTTGGGTCGGTCCTGACACAACGCATGTCCCTATAACGTTGCCGTGGTTACGCTGATGTTAACCGTCTCCAAGGGAAcctcagaaagaaagaaagtgagagactGTGCTCTCATACAATCCACAATCATTTCATACATAGTTCTTGTGAGGCCCTATGAAGTAAGATACGATCATTTACGGGATCCGACACGGGTGTTCTGTAATATCTGATATCGTAACATTGTTTTATTGATACTTCATAGTGCTAGCAGCTTCTAAACAGAAACAGTGAGGCAGTGTATTCAGTCCCTTGTAGTGCCACACATTATGCAAATTATTAacctatacacaatgagtaaacTCTGTAAGAGATGTCTATGTCCCCCTCGGTCTGCAAAAATGATTGCTTTTTCAATTCCCCTTTGGTTTAACTTTTCAAAGTGTTGGTATTTTTCTTCAATGTACTGTACTCTGTTGGCTGCTTGTTATATCACTGAGATCAACGTCAATTTCCAACTGTCATACCTGCCCGACCCAACAGAAAACACAGTAATGTTTGATACATTCAAGACAGAGCTCCTTTAAGGTGTGGATTTCTTGTATTCTATGACATTGTGTATATAAATCAAAAATGATAATAAGATGAAGACAATCTAGccacattcataaaaaataagtTTGCATTTTCAGAGTGAGTGGCAAACTTGTTTTATGAACCTTTCTGGTAATCATAATAATGATATTAATGATGATCATAATTAATAATATATAGCACAGAATTATTCCAGGCACTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1739076 False 1655 lncRNA 0.38 1 14490462 14492116
TU1739077 True 1566 lncRNA 0.38 1 14490462 14492027

Neighbor

gene id symbol gene type direction distance location
LOC110495483 LOC106575569 coding upstream 4506 14087058 ~ 14485956 (+)
LOC110495485 LOC106575653 coding upstream 510575 13975110 ~ 13979887 (+)
LOC110495487 LOC106574771 coding upstream 521273 13883956 ~ 13969189 (+)
LOC118941229 NA coding upstream 679174 13811236 ~ 13811288 (+)
LOC110495495 LOC106574775 coding upstream 867644 13592980 ~ 13622818 (+)
LOC110495481 LOC106574739 coding downstream 64860 14556326 ~ 14558589 (+)
LOC110495476 LOC106575616 coding downstream 96535 14588651 ~ 14643860 (+)
LOC110495457 LOC106573985 coding downstream 261320 14753436 ~ 14764586 (+)
LOC110496915 LOC106575634 coding downstream 286974 14779090 ~ 14780827 (+)
zgc:92380 LOC106575639 coding downstream 300821 14792937 ~ 14799311 (+)
G1519303 NA non-coding upstream 2590 14487492 ~ 14487872 (+)
G1519300 NA non-coding upstream 17618 14465344 ~ 14472844 (+)
G1519296 NA non-coding upstream 31010 14459208 ~ 14459452 (+)
G1519286 NA non-coding upstream 46602 14443610 ~ 14443860 (+)
G1519282 NA non-coding upstream 73425 14416781 ~ 14417037 (+)
G1519304 NA non-coding downstream 1763 14493879 ~ 14494081 (+)
G1519534 NA non-coding downstream 3394 14495510 ~ 14495716 (+)
G1519537 NA non-coding downstream 6152 14498268 ~ 14498607 (+)
G1519555 NA non-coding downstream 20916 14513032 ~ 14513428 (+)
G1519561 NA non-coding downstream 34622 14526738 ~ 14527008 (+)
G1519096 NA other upstream 54342 14434762 ~ 14436120 (+)
G1517545 NA other upstream 1302382 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1547968 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 1554184 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 1618299 12833651 ~ 12872163 (+)
G1519538 NA other downstream 6670 14498786 ~ 14499137 (+)
G1519733 NA other downstream 321866 14813982 ~ 14814886 (+)
il8r il8r other downstream 406140 14898154 ~ 14901354 (+)
LOC110495440 LOC106575601 other downstream 716853 15207355 ~ 15251952 (+)

Expression


Co-expression Network