G1521387


Basic Information

Item Value
gene id G1521387
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15685901 ~ 15815957 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741859
attttatctttatttaactaggcaagtcagttaaagaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaacgacagatttgtaccttgtcagctcggggatttgaacttgcaaccttccggttactagtccaatgctctaaccactatgctaccctgccaccccatctatggatttcacatgacagggaatacaggtatgcatcgattggtcacagataccttaaaaaaaataatgtagagGAGTGGTTCAGAAAACAAGTCaggatctggtgtgaccaccatttgcctcatgcagcgtgacatctcatttgcatagagttgatcaggccgttgattgtggctgtggaatgttgtcccacttctcttcaatggctgtgcaaagttgctggttATTGGCCAGAACTGGAACCgactgtcgtacacgttgatccggacttccagagcatcccaaacatgctcaatgtgacACGTCTGGTAGGTCTGAAGGTCACTTTAGAATTGGGactttttcagcttccaggaattgtgtacatatcCTTGCGGCATGGAGTGtgcattatcattctgaaacatgaggtgatttcggcggatgaatggcacgacaatgggcctcaggatctcgtcatggtatctccgTGGATGCAAATTGCTATAGATGAaacgcaattgtgttcattgtccatagcttatgcctgcccatactataaccccaccgccaccatgggttactctgttcacaacattgacatcagcaaactgctcacccatACGACGTCATGCTGTCTGCCACCTgtccagtacagttgaaaccgggattcatccgtgaagagcacacttttccagcatgccagtggccatcgaaggtgagcatttgacactgaagtcggttacgatgccgaactgcaatcaggtcaagaccctggtgaggatgacgagcattcAGATGAGCTTGTGCAGACAGTTTGttcagaaattcttcggttgtgcaaacccacactTTTATTGGctatctgggtggctggtctcagacgatcctgcagttgaagaagctggatgtggaggtcctgggctggcgtggtcacacgtggtctgcggttgtgaggccggttggacgtactgccaaattctctaaaacggagGCCtcatatggtagagaaattaacattcaattctctggcaacagctctgatggacattcctgcagtcagcatgacataAGACTACCAAAATCACAAATTACCTTTTTGAAGGACATACCATTAAATCTGCCCCCACTCCCTCTCAAACATTTGTAAGTGCAAGTCATTATCACTCGACACATCCTCCCCACTCGCTCAATcatacaaatatacacacacagtatagtcCTGTATGCTACGTTATATTGTCAAAGTCAGAAGAGTTACAGATCGAAAAGCATTGTTTAGAATAGACATTCTCTGTAAGGTGTAATGGGGAACAGTGTCAGCTCTACACATTACATTTCTATCAGCAACATTCTAAACATTGCAGCACCACAGAATACACCTAGTccaaaaatctaaattgaatgtcttaagatgttgcaaGATATGAGAGTTTCCTCTGAATTTAAAAAACTGGCCAACTAACACAAattaaacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacaaagatataaaactctatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttgggGTATGTCTTTATAAGCTTGgcac
>TU1741861
cttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcctaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctccaacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatgtctgatcagtcttcttcttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcacttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccagctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcag

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741859 False 1950 TUCP 0.44 2 15685901 15759234
TU1741861 True 761 lncRNA 0.43 2 15756222 15815957

Neighbor

gene id symbol gene type direction distance location
LOC110495638 LOC106575588 coding downstream 45854 15705622 ~ 15710368 (-)
LOC110495443 LOC106574666 coding downstream 151513 15601688 ~ 15604709 (-)
LOC110495447 LOC106575526 coding downstream 155347 15595085 ~ 15600875 (-)
LOC110495442 LOC106574707 coding downstream 255435 15434412 ~ 15500787 (-)
LOC110495436 LOC106574694 coding downstream 349675 15345980 ~ 15406547 (-)
LOC110495652 LOC106575579 coding upstream 27253 15843210 ~ 15848190 (-)
LOC110497059 donson coding upstream 53777 15869734 ~ 15873958 (-)
LOC110495653 LOC106574394 coding upstream 61546 15877503 ~ 15928773 (-)
LOC110497061 LOC106574727 coding upstream 181009 15996966 ~ 16015860 (-)
LOC110495656 NA coding upstream 206609 16022467 ~ 16024382 (-)
G1521354 NA non-coding downstream 81297 15671321 ~ 15674925 (-)
G1521355 NA non-coding downstream 84985 15632723 ~ 15671237 (-)
G1521339 NA non-coding downstream 156809 15598874 ~ 15599413 (-)
G1521337 fam171b non-coding downstream 166394 15589085 ~ 15589828 (-)
G1521315 NA non-coding downstream 195968 15557173 ~ 15560254 (-)
G1521485 NA non-coding upstream 9891 15825848 ~ 15826369 (-)
G1521488 NA non-coding upstream 12194 15828151 ~ 15866665 (-)
G1521452 NA non-coding upstream 32723 15848680 ~ 15849851 (-)
G1521498 NA non-coding upstream 50738 15866695 ~ 15867023 (-)
G1521503 NA non-coding upstream 60196 15876153 ~ 15876784 (-)
G1521308 NA other downstream 207739 15547876 ~ 15548483 (-)
G1520339 NA other downstream 479201 15276063 ~ 15277021 (-)
LOC110495477 fundc1 other downstream 1168663 14580962 ~ 14587615 (-)
G1521563 LOC106575575 other upstream 179007 15994964 ~ 15995317 (-)
G1521546 LOC100380633 other upstream 239171 16055128 ~ 16084966 (-)
G1521712 NA other upstream 602293 16418250 ~ 16418918 (-)
inh inh coding downstream 417784 15266650 ~ 15268117 (-)

Expression


Co-expression Network