G1521562


Basic Information

Item Value
gene id G1521562
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15993634 ~ 15994075 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1742065
CCACAGAGTCACCAGCACCGTCAGGACTCCCACCAACAGGACCACAGATACTTTCTGCATGACTGCACCTTCTTACTGGAACTTCTGGCCGTTTCTGAACCAATTCTGACCACAGCTTCTGGGCTTCAACCACAAGTACCGGTCTGGTTCTAAAGCTCAGGTCTTCGGGTACCAACAAGGTCTCGTTTTAGTCTCAAAGAGCTGAGTTAGCTCTGTCGTCTTCTTTAGCTGCACGTTGAGAGAACATGTATGTCTCCTGGGGGTCAGAGTTCAGCCAATTGTTTGGGTGTCTGTTAGTCTTCTTGTCCAAAGTCTGTTCCTTAATTTCTGTCTCTGAAGTCACTAGCTTGTTTGTCGTACACACACTTGTCGTTCAGCACCGATGCGCCTCTGTGAAGAAGGCTTgtcgagagtgtgtgtgtgcagaggtgCGTGTGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1742065 True 442 lncRNA 0.49 1 15993634 15994075

Neighbor

gene id symbol gene type direction distance location
LOC110495653 LOC106574394 coding downstream 64861 15877503 ~ 15928773 (-)
LOC110497059 donson coding downstream 119676 15869734 ~ 15873958 (-)
LOC110495652 LOC106575579 coding downstream 145444 15843210 ~ 15848190 (-)
LOC110495638 LOC106575588 coding downstream 283266 15705622 ~ 15710368 (-)
LOC110495443 LOC106574666 coding downstream 388925 15601688 ~ 15604709 (-)
LOC110497061 LOC106574727 coding upstream 2891 15996966 ~ 16015860 (-)
LOC110495656 NA coding upstream 28491 16022467 ~ 16024382 (-)
LOC110495663 NA coding upstream 124026 16118101 ~ 16126127 (-)
LOC110495662 LOC106575549 coding upstream 141001 16135076 ~ 16164464 (-)
LOC110495664 NA coding upstream 175170 16169245 ~ 16171657 (-)
G1521540 NA non-coding downstream 23359 15970045 ~ 15970275 (-)
G1521539 NA non-coding downstream 25456 15967929 ~ 15968178 (-)
G1521538 NA non-coding downstream 25976 15967435 ~ 15967658 (-)
G1521537 NA non-coding downstream 28109 15964698 ~ 15965525 (-)
G1521536 NA non-coding downstream 29958 15963345 ~ 15963676 (-)
G1521564 NA non-coding upstream 1643 15995718 ~ 15995934 (-)
G1521565 NA non-coding upstream 18616 16012691 ~ 16013020 (-)
G1521566 NA non-coding upstream 19162 16013237 ~ 16013586 (-)
G1521572 NA non-coding upstream 38894 16032969 ~ 16033299 (-)
G1521575 NA non-coding upstream 42998 16037073 ~ 16037440 (-)
G1521387 NA other downstream 234400 15685901 ~ 15815957 (-)
G1521308 NA other downstream 445151 15547876 ~ 15548483 (-)
LOC110495442 LOC106574707 other downstream 493190 15434412 ~ 15500787 (-)
G1521563 LOC106575575 other upstream 889 15994964 ~ 15995317 (-)
G1521546 LOC100380633 other upstream 61053 16055128 ~ 16084966 (-)
G1521712 NA other upstream 424175 16418250 ~ 16418918 (-)
LOC110495686 LOC106574627 other upstream 943577 16915423 ~ 16946521 (-)

Expression


Co-expression Network