G1521871 (LOC106575518)


Basic Information

Item Value
gene id G1521871
gene name LOC106575518
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16680775 ~ 16683073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1742412
tctgactgtggtgtaatgtccagtgttatagttctgactgtggtgtaatgtccagtgttatagttctgactgtggtgtaatgtccagtgttatagttctgactgtggtgtaatgtTCAGTGTCTTTACATTTCAGTGAAGATTCATAATACCACCTAATAACAGACGGCCATCTTAAATATCATTGCTGCTTTCAATGAAACAgacgcacgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtgtataaCAACATCCTTATCTATATATGGGACATCCAAATACTTTTGTTCCTCTTGGTTTGAACTGATCCCACAATGCACCACAGGACCACAAGACATCTACTGTCAAGCAGCTAAATGTGTCTAGAAAAACCTTGGTTTTGGTACagtcccccctccatctccctttctCGTTCTATCTCTCCTCACACCCACCACACAGACTGTGTTCTTAGGAGACGGATGGAGGGATGCATGACCGGATGAAGGAGTGAatggatgagaggaggagtggaggatgagaggaggcagcagtgaggaggaggagatgtaGTGAGGCTCGAGAGGACAGATCCACACGAGCATCACTTCAAAAGGAACAAGAGGAGAAACggtagaggtaaaaaaaaaaacatgcaaaaaTTAAACAGAGAAgatctgagggagggagagagcacacAGTGACAGATGAGATGTTAAGACCCCTGACAGACTCTTGTGATAGAATTATAACACTCTTATAACACCTTCATGAGGCTCTCACGCATCGTGTGAGACTTCTATGGGTATGTTCTATATTTTTTATGCCAAGGGACAGAGCAAAGCAGCAAAGCATAATGTCTACATTCTACATGTTATATTTCTGTAACAGAGATCCACTGCTCTTAAAGGCTTCAGATCTGAGTGTGAGAGATGTTAGATATCTACATGGACAACGTTAAAGCCCAGAAACAAAGTAGGTTCTCTCTCCTATCTAATACTGTCCACCTTCCTCTGTCCCACCCAGTCTCAGTGTAAGGCAATAACCAGCAAGGCAAGCCATTGAAAAAGTATTTTCTGAGCCTTTGGTTCCAGACTACTGTGTATTTCAAAGGAAACACTGTGTAGATGTTAAGGCGGAAAAGGATTCCCATGCATACTGGTTTCCCACTGTGGGTCCTTAGCACTACGTGAGGCAGGATGCCTCAGCTTCCATGTCAGGAAATGGGACGGTTACAAGGGGGAATGGAGGTATAATCACATCACTCCACAGTAGACACAAGGACAGTCTATGACACGGGATGCTACACACACAGAACTGTCTCTAGTCCAGTAGAGATAAACCACTATCACGGCCTAGCCACTTACAACTGAACTGGAAAAGACTAGTGTCTTATGGGGTGTTCCTGGATAAGAGATATGCACAGAGGCAACACCAGTTTGTTCTATAGagcaggacagaaagagagaggaagagaggaaaagacaaGACAAAAGAAAAACAGGAAAGTGTGGTCAGTTAAAGCACATGCAATACCTCTGAACATCTTCCATTCATACTGGGCATCCCTGCTTTATGACACTTCAAATGACATCATCACTGACCCACAGTAGGCATTAATGGGTGGAGCCAAGACTGTTCAGTTCACTCAGCTCCTTGTGCTAACACAACACAGCCGTAGGACTGTGGATCATGTGGATCGTCCTTCTGTGTGTATTTGGTGTTTGTTTGCTTTTTCACAATGACATTGGTAACTGTAAGTGTCTAGATTAGGTATCTATTGTCTAGAGGACAGATTGTTCCAGTGACCACTCAACACTGAAATCTTGGTCTAGACTTCCAGTCTAAATCAGACTAAACTCCACTCTAGACTACACCGAGGTCTCAGGCCCTGCCCCATTGTGGGCGTAGCCAGCCCCAGAGTGACGGGAGTTGCCGGCGAATCGGAGGAGTGGGGTGAAAGTGCAGTAGTCGGGCCCGCTCCTCCAGTGGGTAAACATGAGTTTTTTGGTGAAGGGTTCAGACCTTCTGGGAATGGGGTTCTGGTGGTCGGCCCTCCTGCGCGTGGGCGCGTGGAGAGATGCCAGCGGGGTGAACTCCGATAGCTGGCCGTTATACAGCTTGTCTGCAT

Function

NR:

description
PREDICTED: probable phospholipid-transporting ATPase IH

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1742412 True 2160 lncRNA 0.46 3 16680775 16683073

Neighbor

gene id symbol gene type direction distance location
LOC110495682 tubgcp3 coding downstream 69938 16584154 ~ 16610837 (-)
LOC110495681 LOC106575511 coding downstream 96775 16516667 ~ 16584000 (-)
LOC110495677 LOC106575510 coding downstream 164766 16494961 ~ 16516009 (-)
LOC110495679 LOC106575508 coding downstream 204523 16473995 ~ 16476252 (-)
LOC110495671 LOC105019845 coding downstream 269266 16386046 ~ 16411509 (-)
LOC110495684 LOC106574593 coding upstream 49252 16732325 ~ 16735884 (-)
LOC110495686 LOC106574627 coding upstream 232350 16915423 ~ 16946521 (-)
LOC110495685 eif5b coding upstream 264694 16947767 ~ 16969915 (-)
LOC110495687 LOC106574624 coding upstream 287980 16971053 ~ 16972390 (-)
LOC118941063 LOC106574632 coding upstream 326310 17009382 ~ 17011759 (-)
G1521858 NA non-coding downstream 24559 16655121 ~ 16656216 (-)
G1521827 NA non-coding downstream 69537 16611021 ~ 16611238 (-)
G1521810 NA non-coding downstream 115979 16564298 ~ 16564796 (-)
G1521772 NA non-coding downstream 167181 16513315 ~ 16513594 (-)
G1521874 NA non-coding upstream 2501 16685574 ~ 16685809 (-)
G1521878 NA non-coding upstream 11057 16694130 ~ 16694470 (-)
G1521880 NA non-coding upstream 17381 16700454 ~ 16700805 (-)
G1521882 NA non-coding upstream 29862 16712935 ~ 16713150 (-)
G1521884 NA non-coding upstream 33945 16717018 ~ 16717225 (-)
G1521712 NA other downstream 261857 16418250 ~ 16418918 (-)
G1521546 LOC100380633 other downstream 595809 16055128 ~ 16084966 (-)
LOC110495656 NA other downstream 656393 16022467 ~ 16024382 (-)
G1521563 LOC106575575 other downstream 685458 15994964 ~ 15995317 (-)
LOC110497059 donson other downstream 808309 15869734 ~ 15873958 (-)
G1522794 NA other upstream 758586 17441659 ~ 17450178 (-)
LOC110528763 LOC106575486 other upstream 959345 17640874 ~ 17671930 (-)
LOC118941106 LOC106575483 other upstream 1004857 17685551 ~ 17702827 (-)

Expression


Co-expression Network