G1521235


Basic Information

Item Value
gene id G1521235
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16935961 ~ 16937257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1741647
GCAGCCAGTCAGACGGAAGAAACAACCTACATTACAGCACACGAACACACGGCAGGCAAAAGCCTCAATTCTAAAACCCTCGTGGTATTTCAGATCTCAGTGCAGTAGGTCGTGTAGGTTCtcaccaggttatagtaggtctTGCTGACAGCTGGTGTGTCAAAGCCTTTCACAGGGTTTTTGAGGGTGCCAGACTTAGGAGACACTGGTTTGtctgtgtggtagagagagaggataagaaaGTGTAGAGTAGAAGTAGGACAGAAACATGAAGTTGTTCATTTTATAATAGAGTTTACAGCAATGTTATCCGGCAGGGAAAGATGCTGGCTTCATTTagctacagaccagaccagaggctTTCTATGCACTACAGAGAAATGGGGACACATTCATGTTGCTGTGTTTTAGTAGCTAACCCTTGGGGCAGAGATAGCATAAAGACTGGAGAGAGAACAGCATGACACACAGCAAAGGAACAAAAATTGTGGCTCGCTCTCTGCAGCCAGAGACAGAGGGCATGTTCATGTGTGACTGATTGGATACAGAAAGGGAGTGGGTTACCACTGTGAGCTTATAGAGAAATGGCAATTAGCTTGATACATAGTTCATTATGTGTAGGTAGGTAGTAGGCCAACAGAGGGAAGCACTGGgagctgtttggtgtgtttgggGAAGTCCCACCCACAGGCTAAGATAAGGAATGTCCTGTCTTTGTTTAACCacgcagtttccttcctctccgttaTAATGCACAATAGCTACATTAATATGCAATCACTGTGCACAACAGCTGTGCACAAAGAGTTTATACATCTACTATACATTTCTGTATATGATCTGATAGAACACTTAgtgttgcagatagaaatataGTGTATAGAACAAACTCAGAGCTCTACTCtgcattacatttctatctgtaaTGCTTTGCACATTGCAGTCCATTGAATAAACTGGAGTAGAGCCATGTCTTGGTGAGCTTAGTATTGGCAACACGTTCCTTCACTCTGTAATTCCTCTTTTAAAAGacgcactatgcagaaattgctccgcTATTTCCTGGTTTCTCAAATTCTAGTAGTTCTCCTCATTTCAGTTTATGCGACAAAACAAGCacgtatagtgtagagaatcaataTTGTATTTTCGGCtctttgaagctggtgtacaaaaactAAAGTAGAagacgcaaaaactaaacttaagaacaagaagcatagaaatagcgcacatagaacatatctaccacTTCAGTGCGAATGACTGATCTATGgacacccaaaaagttacatat
>TU1741648
CCTTCACTCTGTAATTCCTCTTTTAAAAGacgcactatgcagaaattgctccgcTATTTCCTGGTTTCTCAAATTCTAGTAGTTCTCCTCATTTCAGTTTATGCGACAAAACAAGCacgtatagtgtagagaatcaataTTGTATTTTCGGCtctttgaagctggtgtacaaaaactAAAGTAGAagacgcaaaaactaaacttaagaacaagaagcatagaaatagcgcacatagaacatatctaccacTTCAGTGCGAATGACTGATCTATGgacacccaaaaagttacatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1741647 False 1297 lncRNA 0.42 1 16935961 16937257
TU1741648 True 295 lncRNA 0.37 1 16936963 16937257

Neighbor

gene id symbol gene type direction distance location
LOC110495683 LOC106575518 coding upstream 252884 16613649 ~ 16685491 (+)
LOC110495676 LOC106575553 coding upstream 439825 16486853 ~ 16496136 (+)
LOC110495675 LOC106575507 coding upstream 449657 16476472 ~ 16486304 (+)
LOC110495678 LOC106575507 coding upstream 461861 16471104 ~ 16474100 (+)
LOC110495674 LOC106575504 coding upstream 467508 16454118 ~ 16468453 (+)
LOC110497065 LOC106574631 coding downstream 35826 16973083 ~ 16984148 (+)
LOC110495688 LOC106574622 coding downstream 50483 16987740 ~ 17001956 (+)
LOC110495691 LOC106574621 coding downstream 67772 17005029 ~ 17009539 (+)
LOC110495692 tm182 coding downstream 128620 17065877 ~ 17069278 (+)
LOC118941044 NA coding downstream 511181 17448438 ~ 17469192 (+)
G1521234 NA non-coding upstream 822 16934919 ~ 16935139 (+)
G1521230 LOC106574625 non-coding upstream 3494 16927179 ~ 16932467 (+)
G1521228 NA non-coding upstream 9643 16926109 ~ 16926318 (+)
G1521227 NA non-coding upstream 10267 16925162 ~ 16925694 (+)
G1521226 NA non-coding upstream 11192 16924525 ~ 16924769 (+)
G1521240 NA non-coding downstream 7469 16944726 ~ 16945089 (+)
G1522078 NA non-coding downstream 255018 17192275 ~ 17192511 (+)
G1522081 NA non-coding downstream 257746 17195003 ~ 17195262 (+)
G1522091 NA non-coding downstream 267175 17204432 ~ 17204648 (+)
G1520748 NA other upstream 997143 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1013062 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1119956 15756493 ~ 15816005 (+)
LOC110527374 LOC106592210 other downstream 686559 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 828962 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 902412 17839669 ~ 17844014 (+)
G1522438 NA other downstream 918884 17856141 ~ 17860614 (+)
G1522684 NA other downstream 1441830 18379087 ~ 18380258 (+)

Expression


Co-expression Network