G1522401 (LOC106591655)


Basic Information

Item Value
gene id G1522401
gene name LOC106591655
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17724115 ~ 17733070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743031
gtattgataacctaTACTCTAATATAGACAATATTGATAACCTTTTCTCTAACGTGGACATTATTGATAACCTATACTCTAATGTAGACAGTATCGATAACCTATACTCTAAtatagacagtattgataacctaTACTCTAACGTAGACAGTATTTATAACCTATACtctaatatagacagtattaataaCCTATACTCTAACGTGGACAGTATTGATAACCTATGCTCTAATATAGATAGTATTGATCAGTGTTTCTCTACTTGTGGTCCAGGCCAATCAACTCTTTCCCTACGTCCTCGTAAGGGGTGTTCAGGGCTCGATGGATCTTCTGGCTGGTATGCAACCagtaggtgagtgtgtgtgaccGTCGTAGCCGGGGCAGGGCTAGGTGATAGAAGGTGTGTTCAGCTGCCAAGGTAAAGATGGCTCCAACCACCCCCACACACAACATCACAAACAGGCCTGAGAAATGATCTATCCCCATCGATAAAttctcagTGTTAGTGAACACTCGCTTCCCACATGGCACCACCTTGTACCATTTCTCATGTAATATGTCCATGTACCCTTCTGACTTGTAGCGACTGATGAATTCAGACACGTTGGCAGTGAGAGGAGAGCCTTGGGCAACACCTATACCAtaccctggacacacacacagacacacacacaaactcacacaaacacacacacacacacacacacacatgcacagagtttaaatcatctgtctgtctcagtgaatagctagcctggtcccagatctgttagttCTCTTGCCAACCTCCTTGTTGCCATTGTCAAGTCAAACATGTTTGGCACGACACTGAATAACAATGagttggcatgatggcacaaacagactggcactaacattgtgtgtgtgtgtctatcttaCCCTCTATAGCGAAAGGCTTGCCCACAGTCGCTAGTTTACACTCAGCATCGATGGAGACTTCATAGTCCAATAGAGCTTTATCCATGATGAAGGCATCTAGTAGGGGAGGATctgtc
>TU1743032
cacagacaccacAGAATATAAAAAGAGTTTGGTTGCTGTGGTTTCTGTCGACTATGACAAACACatgcatttacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacctcagTGTTAGTGAACACTCGCTTCCCACATGGCACCACCTTGTACCATTTCTCATGTAATATGTCCATGTACCCTTCTGACTTGTAGCGACTGATGAATTCAGACACGTTGGCAGTGAGAGGAGAGCCTTGGGCAACACCTATACCAtaccctggacacacacacagacacacacacaaactcacacaaacacacacacacacacacacacacatgcacagagtttaaatcatctgtctgtctcagtgaatagctagcctggtcccagatctgttagttCTCTTGCCAACCTCCTTGTTGCCATTGTCAAGTCAAACATGTTTGGCACGACACTGAATAACAATGagttggcatgatggcacaaacagactggcactaacattgtgtgtgtgtgtctatcttaCCCTCTATAGCGAAAGGCTTGCCCACAGTCGCTAGTTTACACTCAGCATCGATGGAGACTTCATAGTCCAATAGAGCTTTATCCATGATGAAGGCATCTAGTAGGGGAGGATctgtc

Function

NR:

description
glutamate receptor ionotropic, NMDA 3B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743031 False 1016 lncRNA 0.43 4 17724115 17733070
TU1743032 True 691 lncRNA 0.46 2 17732057 17733070

Neighbor

gene id symbol gene type direction distance location
LOC110519433 NA coding upstream 7196 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 9079 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 83325 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 87531 17631679 ~ 17636584 (+)
LOC110527374 LOC106592210 coding upstream 92983 17623786 ~ 17631132 (+)
LOC110528768 LOC106591671 coding downstream 98380 17831450 ~ 17839017 (+)
LOC110527394 LOC106591034 coding downstream 309663 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 324632 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 343130 18076200 ~ 18093990 (+)
atr atr coding downstream 364493 18097563 ~ 18129363 (+)
G1522396 NA non-coding upstream 6069 17717697 ~ 17718046 (+)
G1522348 LOC106575485 non-coding upstream 39583 17675210 ~ 17684532 (+)
G1522385 NA non-coding upstream 52175 17670456 ~ 17671940 (+)
G1522372 NA non-coding upstream 79376 17642830 ~ 17644739 (+)
G1522410 LOC100194703 non-coding downstream 14375 17747445 ~ 17747757 (+)
G1522412 NA non-coding downstream 18637 17751707 ~ 17753430 (+)
G1522413 NA non-coding downstream 27663 17760733 ~ 17764467 (+)
G1522414 NA non-coding downstream 32844 17765914 ~ 17766156 (+)
G1522416 NA non-coding downstream 38309 17771379 ~ 17771651 (+)
LOC110495674 LOC106575504 other upstream 1255692 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1785297 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1801216 15919157 ~ 15922899 (+)
LOC110495644 LOC106575583 other upstream 1924234 15796262 ~ 15801788 (+)
G1522415 LOC106575491 other downstream 33149 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 106599 17839669 ~ 17844014 (+)
G1522438 NA other downstream 123071 17856141 ~ 17860614 (+)
G1522684 NA other downstream 646017 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 861264 18594324 ~ 18595682 (+)

Expression


Co-expression Network