G1522947


Basic Information

Item Value
gene id G1522947
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17839568 ~ 17841541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743730
gtaaatacacacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacatacagttacattcactagctagagtaaatacattcagttacattcactagctagagtaaatacattcagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacatacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacacacagttacatcCAACAGCATTGACACAAAAACATGAGGAAAAACGATCAAACAAAAATAGGAGTATTTTTCTACTGCTGGGTCACGCCCACAACTATCCCTAACCACACTACCCAGGTCCTCCAATGGTGGGCCTCCACAGTAAGTGGGTGAGGTTTATCCACTTTCACTTCTTGTATTTCACCCAATCAGAGCTCAGCTTGGGAGGAAACGGTAAAAGCTTATATTTTTAACTACTTCTATATCTAGTCGGTTAAGGTTATTTTCTTTTAACGATCTTATAACATTTATTACAGTCTAAATTAGCCAAATTAGAAGGttataaaaacattaaaaaacaataaacactattTTATTACAACACTAAAGAAAAAGTTGCCACTGTTGCTTTTAAAGTCTGAGGTGCTGTTTGTTTGTTCATTTTGTCTCGGGAGAAGGTGTGCCATGTCTCTGTCCACTTCCTGGTATTCAATCATAATGCATTCCGGTTTGAACCGCACAGAACGTCAACAATCTTCCTAACAGCTTCCTAAAGCCCATTTAGGGACGGGTGATTTAAATTAACACCAGCTATCCACATTGGTTAAATTGCTGGTTTACTCAATCGGTCAATGAAATGCACTGCGATTGAAttcctgcctctatctctctcctgctgTGGCTGGCTGTCTTTGTGGGATGTTGAGACTGGCTTCTGTTTGCTGACTAGATATTTGTTTTTCTTCTGCATATTTTTGCTATCTGAGTTGTAAAATGTTCTGATGTATTTGGGGTTTTCTGTTATTGTTTTTGACTTcatctgaaatgacaccctatcaggactctggccaaaagtagtgcactgtaaagggaatagggtgccattttgaatgcagtgtgtGTTTCTGCTCCTGAGTGCACTTGTTTAATCTGAGTTGTCGATATCGCCTCCATGCAACAATTAAACATTATTTATTGCAAATATGATCCGGACTGGCTCTGTTtttgtcatacacacacacacacacacacacacacacacacacacacacacacac
>TU1743731
gtaaatacacacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacatacagttacattcactagctagagtaaatacattcagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacatacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacacacagttacattcactagctagagtaaatacacacagttacatcCAACAGCATTGACACAAAAACATGAGGAAAAACGATCAAACAAAAATAGGAGTATTTTTCTACTGCTGGGTCACGCCCACAACTATCCCTAACCACACTACCCAGGTCCTCCAATGGTGGGCCTCCACAGTAAGTGGGTGAGGTTTATCCACTTTCACTTCTTGTATTTCACCCAATCAGAGCTCAGCTTGGGAGGAAACGGTAAAAGCTTATATTTTTAACTACTTCTATATCTAGTCGGTTAAGGTTATTTTCTTTTAACGATCTTATAACATTTATTACAGTCTAAATTAGCCAAATTAGAAGGttataaaaacattaaaaaacaataaacactattTTATTACAACACTAAAGAAAAAGTTGCCACTGTTGCTTTTAAAGTCTGAGGTGCTGTTTGTTTGTTCATTTTGTCTCGGGAGAAGGTGTGCCATGTCTCTGTCCACTTCCTGGTATTCAATCATAATGCATTCCGGTTTGAACCGCACAGAACGTCAACAATCTTCCTAACAGCTTCCTAAAGCCCATTTAGGGACGGGTGATTTAAATTAACACCAGCTATCCACATTGGTTAAATTGCTGGTTTACTCAATCGGTCAATGAAATGCACTGCGATTGAAttcctgcctctatctctctcctgctgTGGCTGGCTGTCTTTGTGGGATGTTGAGACTGGCTTCTGTTTGCTGACTAGATATTTGTTTTTCTTCTGCATATTTTTGCTATCTGAGTTGTAAAATGTTCTGATGTATTTGGGGTTTTCTGTTATTGTTTTTGACTTcatctgaaatgacaccctatcaggactctggccaaaagtagtgcactgtaaagggaatagggtgccattttgaatgcagtgtgtGTTTCTGCTCCTGAGTGCACTTGTTTAATCTGAGTTGTCGATATCGCCTCCATGCAACAATTAAACATTATTTATTGCAAATATGATCCGGACTGGCTCTGTTtttgtcatacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743730 False 1334 lncRNA 0.38 2 17839568 17841541
TU1743731 True 1302 lncRNA 0.38 2 17839568 17841541

Neighbor

gene id symbol gene type direction distance location
LOC110510546 LOC106575482 coding downstream 24565 17719504 ~ 17815003 (-)
LOC118941106 LOC106575483 coding downstream 136741 17685551 ~ 17702827 (-)
LOC110527371 LOC106575485 coding downstream 154974 17675207 ~ 17684594 (-)
LOC110528763 LOC106575486 coding downstream 167638 17640874 ~ 17671930 (-)
LOC110527378 LOC106575453 coding downstream 206004 17630872 ~ 17633564 (-)
LOC110527386 LOC106575479 coding upstream 826 17842367 ~ 17861866 (-)
LOC100135945 LOC106575464 coding upstream 78544 17920085 ~ 17938169 (-)
LOC110528772 LOC105019808 coding upstream 98396 17939937 ~ 18012067 (-)
trnal-cag-10 NA coding upstream 180930 18022401 ~ 18022696 (-)
trnal-cag-11 NA coding upstream 181785 18023326 ~ 18023408 (-)
G1522974 NA non-coding downstream 58 17839099 ~ 17839510 (-)
G1522962 NA non-coding downstream 26997 17812358 ~ 17812571 (-)
G1522961 NA non-coding downstream 28392 17810972 ~ 17811176 (-)
G1522957 NA non-coding downstream 32262 17807106 ~ 17807306 (-)
G1522956 NA non-coding downstream 33103 17806041 ~ 17806465 (-)
G1522976 NA non-coding upstream 7924 17849465 ~ 17849774 (-)
G1522979 NA non-coding upstream 11406 17852947 ~ 17853152 (-)
G1522980 NA non-coding upstream 12026 17853567 ~ 17853769 (-)
G1522981 NA non-coding upstream 13382 17854923 ~ 17855232 (-)
G1522991 NA non-coding upstream 33067 17874608 ~ 17874824 (-)
G1522794 NA other downstream 389390 17441659 ~ 17450178 (-)
LOC118941063 LOC106574632 other downstream 828190 17009382 ~ 17011759 (-)
LOC118941107 NA other upstream 210439 18051980 ~ 18054354 (-)
G1523149 fndc3b other upstream 590552 18432093 ~ 18436052 (-)
ghs-r ghsr other upstream 604046 18445083 ~ 18447303 (-)
G1523234 NA other upstream 699604 18541145 ~ 18541711 (-)
G1523241 NA other upstream 720365 18561906 ~ 18567247 (-)

Expression


Co-expression Network