G1522452 (LOC106591672)


Basic Information

Item Value
gene id G1522452
gene name LOC106591672
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17847715 ~ 17848379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1743094
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactcacagagACGTATGCAGTAAGGCAGGTGATGAGGGAAACAGTAATAGCATAGGGTATAGAGGTGTTGGGACTCTTGGCTTCCTCTCCTGTTGTAGCGATGATGTCAAACCCTATGAAGGCATAGAAACATGTTGCTGCTCCCTGCATCACcCCTGACCACCCGAAGGGTAAGAACCTTCCATCGTCCCAGTTGTGTCCGTTGACGAAGAAGAGTCCGGCCACCATCATGAAGACCCACACCATCAGGTTGATCACATTCAACACATTATTAAACCCTACTGAGTTCTTCACCCCCAGGGCCACGATCACTGTCACTATTACTGCTATCAGCAGGGCCAGGAGGTCTGGGTACGACTGCTCT

Function

NR:

description
PREDICTED: probable cationic amino acid transporter-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1743094 True 398 lncRNA 0.51 2 17847715 17848379

Neighbor

gene id symbol gene type direction distance location
LOC110528768 LOC106591671 coding upstream 8698 17831450 ~ 17839017 (+)
LOC110519433 NA coding upstream 130796 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 132679 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 206925 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 211131 17631679 ~ 17636584 (+)
LOC110527394 LOC106591034 coding downstream 194354 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 209323 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 227821 18076200 ~ 18093990 (+)
atr atr coding downstream 249184 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 282727 18129571 ~ 18136939 (+)
G1522451 NA non-coding upstream 71 17847344 ~ 17847644 (+)
G1522441 NA non-coding upstream 1605 17845875 ~ 17846110 (+)
G1522440 NA non-coding upstream 2224 17845178 ~ 17845491 (+)
G1522450 LOC106591672 non-coding upstream 2689 17844554 ~ 17845026 (+)
G1522449 slc7a14 non-coding upstream 3222 17844261 ~ 17844493 (+)
G1522457 LOC107687231 non-coding downstream 4486 17852865 ~ 17853253 (+)
G1522458 NA non-coding downstream 5937 17854316 ~ 17854596 (+)
G1522459 NA non-coding downstream 6673 17855052 ~ 17855372 (+)
G1522439 NA non-coding downstream 7055 17855434 ~ 17856063 (+)
G1522460 NA non-coding downstream 12429 17860808 ~ 17861920 (+)
G1522437 LOC106575479 other upstream 3701 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 81021 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 220071 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1379292 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1908897 15938230 ~ 15938818 (+)
G1522438 NA other downstream 7762 17856141 ~ 17860614 (+)
G1522684 NA other downstream 530708 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 745955 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 867483 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 1111065 18959384 ~ 18978475 (+)

Expression


Co-expression Network